Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301C07f
         (344 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0317 - 16328558-16328612,16328698-16328901,16329794-163300...    64   3e-11
01_01_0006 + 26221-26292,26370-26641,27090-27293,27365-27419           59   8e-10
03_06_0610 + 35052455-35053429,35054936-35055511                       31   0.18 
07_01_0077 + 566895-567127,567207-567331,571204-571340,571437-57...    29   1.3  
06_02_0103 - 11829343-11829699,11831560-11831826,11832239-118325...    28   2.3  
05_05_0116 - 22496535-22496576,22496974-22497058,22497468-224975...    27   3.0  
06_03_1332 - 29403320-29407804                                         27   5.2  
01_01_0115 - 856957-858055,858479-858538,858802-859583                 26   6.9  
02_02_0272 - 8452994-8453187,8453850-8454975                           26   9.1  

>11_04_0317 -
           16328558-16328612,16328698-16328901,16329794-16330065,
           16330152-16330220
          Length = 199

 Score = 64.1 bits (149), Expect = 3e-11
 Identities = 29/46 (63%), Positives = 37/46 (80%), Gaps = 1/46 (2%)
 Frame = +1

Query: 205 EIKLFGRWSCYDVQVSDMSLQDYISVK-EKYAKYLPHSAGRYAHKR 339
           E+KLF RWS  DVQV+D+SL DY++V   K+A YLPH+AGRY+ KR
Sbjct: 10  EVKLFSRWSFEDVQVNDISLADYLAVNPTKHATYLPHTAGRYSAKR 55


>01_01_0006 + 26221-26292,26370-26641,27090-27293,27365-27419
          Length = 200

 Score = 59.3 bits (137), Expect = 8e-10
 Identities = 27/45 (60%), Positives = 35/45 (77%), Gaps = 1/45 (2%)
 Frame = +1

Query: 208 IKLFGRWSCYDVQVSDMSLQDYISVKE-KYAKYLPHSAGRYAHKR 339
           +KLF  WS  DVQV+D+SL DY++V   K+A YLPH+AGRY+ KR
Sbjct: 12  VKLFNCWSFEDVQVNDISLADYLAVSSTKHATYLPHTAGRYSAKR 56


>03_06_0610 + 35052455-35053429,35054936-35055511
          Length = 516

 Score = 31.5 bits (68), Expect = 0.18
 Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
 Frame = -3

Query: 258 HIRDLHIVATPSAEKLDFR---NVGGLW*RHGFHN-HAACLGYVVIPVLLGHDWYLKML 94
           ++   ++V TP A  L F      GGLW  +G  +  AAC+  V++ V+   DW+L+ L
Sbjct: 418 NLLSFYLVGTPVAVTLAFGARVGFGGLW--YGLLSAQAACVALVLLAVVWRTDWHLEAL 474


>07_01_0077 +
           566895-567127,567207-567331,571204-571340,571437-571542,
           571635-571885,572018-572128,572209-572320,572626-572716,
           573168-573507,573678-573900,573946-574204,574274-574481,
           574572-574622,574712-574870,574956-575120,575322-575399,
           575732-576031,576107-576259,576871-576918,577019-577188,
           577738-577852,578462-578623,578789-578893,578969-579199,
           579277-579410,579484-579738,579822-580110,580214-580306,
           580395-580520,580646-580897
          Length = 1693

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +2

Query: 140 T*PRQAAWLWKPCLYHKPPTF 202
           T P Q +WLW+  L H P  F
Sbjct: 88  TDPSQCSWLWREVLKHNPDAF 108


>06_02_0103 -
           11829343-11829699,11831560-11831826,11832239-11832559,
           11833783-11833844,11835413-11835446,11835539-11835619
          Length = 373

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 16/57 (28%), Positives = 31/57 (54%)
 Frame = +1

Query: 139 DVAEAGSVVVETMSLPQAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLP 309
           ++   G +VV    L + +D P+ +L   W+     +SDM+L+  IS ++  + Y+P
Sbjct: 215 EIVPGGRMVVSL--LVKRSDKPDTELIQPWTPAVTALSDMALRGVISKEKLDSFYIP 269


>05_05_0116 -
           22496535-22496576,22496974-22497058,22497468-22497545,
           22497656-22497803,22498612-22498771,22499056-22499058
          Length = 171

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 9/27 (33%), Positives = 19/27 (70%)
 Frame = -3

Query: 294 VLLFNGNVVLQRHIRDLHIVATPSAEK 214
           +++F+G++V+ + I+DLH   T   E+
Sbjct: 57  IVMFDGHIVVYKFIQDLHFFVTGGEEE 83


>06_03_1332 - 29403320-29407804
          Length = 1494

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 14/41 (34%), Positives = 18/41 (43%)
 Frame = +2

Query: 212  SFSADGVATMCKSLICLCRTTFPLKRSTQNIYLIQLAGMHT 334
            +FS  G  T   S      + FP   S Q +YL  + GM T
Sbjct: 1268 AFSIWGCPTFLSSYYSTSLSCFPFPSSLQKMYLSDVRGMET 1308


>01_01_0115 - 856957-858055,858479-858538,858802-859583
          Length = 646

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 10/23 (43%), Positives = 18/23 (78%)
 Frame = +1

Query: 259 SLQDYISVKEKYAKYLPHSAGRY 327
           +LQ ++SV+  +A  +PH+AGR+
Sbjct: 12  ALQVFVSVQFVFAVLVPHAAGRH 34


>02_02_0272 - 8452994-8453187,8453850-8454975
          Length = 439

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 9/21 (42%), Positives = 17/21 (80%)
 Frame = +1

Query: 121 EENWNDDVAEAGSVVVETMSL 183
           + +W+DDV+E+G V+ +T+ L
Sbjct: 289 KNDWDDDVSESGWVLEKTVQL 309


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,189,066
Number of Sequences: 37544
Number of extensions: 144225
Number of successful extensions: 345
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 338
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 343
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 494158076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)