Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301B06f
         (418 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0181 + 13523172-13524641                                         30   0.65 
09_06_0236 - 21781508-21783043,21783307-21783504                       29   1.1  
02_01_0140 + 1014594-1016048                                           27   4.6  

>01_03_0181 + 13523172-13524641
          Length = 489

 Score = 30.3 bits (65), Expect = 0.65
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = -3

Query: 362 RGNLLIISSFELMLLCIIVCSLNN*PEVKHSXTIGQPFPKWAITPPCGHFRLKGG 198
           R   +IIS  E +    +  +L   P V+ +  +G+P   W  T PC   +L+GG
Sbjct: 352 RSKDIIISGGENISTVEVEAALFGHPAVEEAAVVGRPDEYWGET-PCAFVKLRGG 405


>09_06_0236 - 21781508-21783043,21783307-21783504
          Length = 577

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 17/56 (30%), Positives = 25/56 (44%)
 Frame = -3

Query: 371 VKARGNLLIISSFELMLLCIIVCSLNN*PEVKHSXTIGQPFPKWAITPPCGHFRLK 204
           +K R   +IIS  E +    +  +L   P V+ +  +  P P W  T PC    LK
Sbjct: 440 IKDRSKDVIISGGENISSVEVEAALYQHPAVREAAVVAMPHPHWGET-PCAFVALK 494


>02_01_0140 + 1014594-1016048
          Length = 484

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = -3

Query: 362 RGNLLIISSFELMLLCIIVCSLNN*PEVKHSXTIGQPFPKWAITPPCGHFRLKGG 198
           R   +IIS  E +    +  +L + P V+ +  +G+P   W  T PC   +L+ G
Sbjct: 357 RSKDIIISGGENISTIEVEAALFSHPAVEEAAVVGRPDDYWGET-PCAFVKLRPG 410


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,420,878
Number of Sequences: 37544
Number of extensions: 203761
Number of successful extensions: 318
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 318
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 754585524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)