Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301A04f
         (385 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1014 - 23586552-23587224,23587402-23587463,23587735-235879...    27   5.1  
11_05_0085 - 18963617-18964294                                         26   8.9  

>08_02_1014 -
           23586552-23587224,23587402-23587463,23587735-23587950,
           23588125-23588209,23589232-23589389,23589505-23589625,
           23590081-23590243,23590330-23590415,23590660-23590742,
           23590816-23591677,23593266-23593693
          Length = 978

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 12/52 (23%), Positives = 25/52 (48%)
 Frame = -2

Query: 228 FNFSLSSIIITVHYTKKYDQKKLFFCCSIDKIASASRSNDTSVNPVITYSHV 73
           F   L+S ++   ++K   +K+  F C  +K+    R    +++P    SH+
Sbjct: 470 FTRPLTSYLLGGLHSKNCSKKEWCFMCEFEKLVGEGRQGKIALSPTGILSHL 521


>11_05_0085 - 18963617-18964294
          Length = 225

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 12/52 (23%), Positives = 26/52 (50%)
 Frame = -1

Query: 346 EYTIDIFKRLHANIFLKISTIIKTYIV*ESTP*MLFLLQIQFFPIEYYYNGA 191
           EY++  F+R       +I+ ++   I  E  P ++ +L++  +   YY N +
Sbjct: 174 EYSMAYFRRTAEKTRARIAALLGMTIPFEDPPIVIHILEVSSWEARYYSNSS 225


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,774,748
Number of Sequences: 37544
Number of extensions: 140102
Number of successful extensions: 267
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 267
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 636799876
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)