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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0071.Seq
         (518 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0303 + 28324155-28325045,28326208-28326321                       57   7e-09
05_07_0039 - 27239362-27239478,27240570-27241463                       56   1e-08
01_06_0923 + 33044283-33044433,33044826-33045242,33046209-330465...    30   1.3  
04_04_1592 - 34649484-34649547,34650118-34650186,34650325-346504...    29   3.0  
03_02_0420 - 8298303-8299265,8299351-8299431,8299546-8299668,829...    29   3.0  
10_08_0491 - 18283404-18283482,18283590-18283658,18283767-182838...    28   3.9  
03_05_0378 - 23619169-23619225,23619389-23619454,23620052-236202...    28   3.9  
03_02_1033 + 13550955-13551700,13552837-13553290,13553451-135536...    28   3.9  
03_02_1031 + 13541327-13542072,13543209-13543662,13543823-135440...    28   3.9  
06_03_1454 - 30261240-30261470,30261896-30262615,30262700-302628...    27   6.8  
06_03_0940 + 26145746-26145879,26146740-26146821,26147349-261474...    27   6.8  
03_05_0969 + 29283905-29284570,29284862-29284930,29286533-292866...    27   6.8  
03_02_0614 + 9863622-9863675,9864353-9864604,9865125-9865268,986...    27   9.0  

>01_06_0303 + 28324155-28325045,28326208-28326321
          Length = 334

 Score = 57.2 bits (132), Expect = 7e-09
 Identities = 40/111 (36%), Positives = 49/111 (44%)
 Frame = -3

Query: 516 GSLGHLNTXTXSPDGSLCASGGKYMKAMXWDLNDGXHLHTLDRNXIITXLXLLXXQXLXX 337
           G  G++N    SPDGSLCASGGK    + WDL +G  L++LD   II  L     +    
Sbjct: 207 GHGGYVNAVAVSPDGSLCASGGKDGVTLLWDLAEGKRLYSLDAGSIIHSLCFSPNR--YW 264

Query: 336 XCLRTFHQDLGSGKQXDG*RAQA*NH*QTXTSKTXPPQCLSLAWSTDGQTL 184
            C  T  QD       +          +   SK     C SL WS DG TL
Sbjct: 265 LCAAT--QDSIKIWDLESKHIVQDLKPEIPVSKNQMLYCTSLNWSADGSTL 313



 Score = 49.6 bits (113), Expect = 1e-06
 Identities = 31/79 (39%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
 Frame = -1

Query: 371 ALXFSXXRXWXXXAXGPSIKIWDLXSKXMVEELRXEI-INKRXLPRQXLLSVSP*RGLLM 195
           +L FS  R W   A   SIKIWDL SK +V++L+ EI ++K  +     L+ S     L 
Sbjct: 255 SLCFSPNRYWLCAATQDSIKIWDLESKHIVQDLKPEIPVSKNQMLYCTSLNWSADGSTLY 314

Query: 194 DKPYPAGYSDNTIRVWQVS 138
                AGY+D TIR++++S
Sbjct: 315 -----AGYTDGTIRIYKIS 328


>05_07_0039 - 27239362-27239478,27240570-27241463
          Length = 336

 Score = 56.4 bits (130), Expect = 1e-08
 Identities = 38/111 (34%), Positives = 49/111 (44%)
 Frame = -3

Query: 516 GSLGHLNTXTXSPDGSLCASGGKYMKAMXWDLNDGXHLHTLDRNXIITXLXLLXXQXLXX 337
           G  G++N    SPDGSLCASGGK    + WDL +G  L+ LD   II  L     +    
Sbjct: 208 GHNGYVNAVAVSPDGSLCASGGKDGTTLLWDLTEGKMLYKLDAGAIIHSLCFSPNR--YW 265

Query: 336 XCLRTFHQDLGSGKQXDG*RAQA*NH*QTXTSKTXPPQCLSLAWSTDGQTL 184
            C  T  +D       +          +    K+    C SL+WS DG TL
Sbjct: 266 LCAAT--EDSVKIWDLESKLVMQDLKPEVQAFKSQMLYCTSLSWSADGSTL 314



 Score = 50.0 bits (114), Expect = 1e-06
 Identities = 32/79 (40%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
 Frame = -1

Query: 371 ALXFSXXRXWXXXAXGPSIKIWDLXSKXMVEELRXEI-INKRXLPRQXLLSVSP*RGLLM 195
           +L FS  R W   A   S+KIWDL SK ++++L+ E+   K  +     LS S     L 
Sbjct: 256 SLCFSPNRYWLCAATEDSVKIWDLESKLVMQDLKPEVQAFKSQMLYCTSLSWSADGSTLF 315

Query: 194 DKPYPAGYSDNTIRVWQVS 138
                AGY+D TIRVW+VS
Sbjct: 316 -----AGYTDGTIRVWKVS 329


>01_06_0923 +
           33044283-33044433,33044826-33045242,33046209-33046538,
           33046806-33046876,33047283-33047357,33047435-33047578,
           33047645-33047816,33047933-33048616,33048711-33048767,
           33048850-33048956,33049485-33049610,33050221-33050295,
           33050387-33050499,33050789-33050905,33051384-33051444,
           33051690-33051763,33052267-33052388,33052472-33052620,
           33053525-33053635,33053946-33054008,33054689-33054722,
           33055253-33055375,33055971-33056033,33056130-33056196,
           33056311-33056356,33056446-33056552,33056923-33056971,
           33057208-33057273,33057544-33057630
          Length = 1286

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = -3

Query: 516 GSLGHLNTXTXSPDGSLCASGGKYMKAMXWDLNDGXHLH 400
           G  G + T   +PDG    +GG+      WDL  G  LH
Sbjct: 238 GHRGAIRTIRFTPDGRWVVTGGEDNIVKVWDLTAGKLLH 276


>04_04_1592 -
           34649484-34649547,34650118-34650186,34650325-34650444,
           34650630-34650742,34650824-34650898,34651224-34651346,
           34651427-34651446,34652354-34652410,34652922-34653860,
           34653961-34654189,34654296-34654439,34654527-34654601,
           34655363-34655433,34656103-34656205,34656407-34656633,
           34656791-34656908,34657239-34657369,34657709-34657802
          Length = 923

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = -3

Query: 501 LNTXTXSPDGSLCASGGKYMKAMXWDLNDGXHLH 400
           +N    +PDG    SGG+      WDL  G  LH
Sbjct: 168 VNAIRFTPDGRWVVSGGEDNVVKLWDLTAGKLLH 201


>03_02_0420 -
           8298303-8299265,8299351-8299431,8299546-8299668,
           8299815-8299983,8300108-8300478
          Length = 568

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
 Frame = -1

Query: 242 PRQXLLSVSP*RGLLMDKPY---PAGYSD 165
           PR+ L+S++P RG   D PY   PA Y D
Sbjct: 451 PREPLVSLAPQRGQYRDPPYRRDPAAYRD 479


>10_08_0491 -
           18283404-18283482,18283590-18283658,18283767-18283883,
           18283953-18284068,18284149-18284223,18284248-18284430,
           18284530-18284591,18284668-18285606,18285723-18285846,
           18285917-18286060,18286151-18286225,18286359-18286382,
           18287025-18287095,18287305-18287407,18287555-18287781,
           18287910-18288027,18288220-18288311,18288793-18288874
          Length = 899

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 13/39 (33%), Positives = 16/39 (41%)
 Frame = -3

Query: 516 GSLGHLNTXTXSPDGSLCASGGKYMKAMXWDLNDGXHLH 400
           G    ++    +PDG    SGG       WDL  G  LH
Sbjct: 146 GHTRRIDVLRFTPDGRWIVSGGSDNSVKIWDLTAGKLLH 184


>03_05_0378 -
           23619169-23619225,23619389-23619454,23620052-23620224,
           23620454-23620664,23621056-23621280,23622157-23622493,
           23624200-23624627
          Length = 498

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
 Frame = -3

Query: 516 GSLGHLNTXTXSPDGSLCASGGKYMKAMXWDLNDGXHLHTL--DRNXIITXLXLLXXQXL 343
           G  G ++  +  PD S   SG    K M W+  D  +++ L   +N ++T   L   + L
Sbjct: 259 GHRGAISCLSFGPDSSELFSGSFDRKIMQWNAEDRTYMNCLFGHQNEVLTMDALSKDRLL 318

Query: 342 XXXCLRTFH 316
                RT H
Sbjct: 319 TVARDRTMH 327


>03_02_1033 +
           13550955-13551700,13552837-13553290,13553451-13553648,
           13553726-13553807,13554496-13554590
          Length = 524

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 15/29 (51%), Positives = 15/29 (51%)
 Frame = -3

Query: 480 PDGSLCASGGKYMKAMXWDLNDGXHLHTL 394
           PDGSL AS G    A  WDL  G    TL
Sbjct: 366 PDGSLAASCGLDAYARVWDLRSGRLWGTL 394


>03_02_1031 +
           13541327-13542072,13543209-13543662,13543823-13544020,
           13544098-13544179,13544868-13544962
          Length = 524

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 15/29 (51%), Positives = 15/29 (51%)
 Frame = -3

Query: 480 PDGSLCASGGKYMKAMXWDLNDGXHLHTL 394
           PDGSL AS G    A  WDL  G    TL
Sbjct: 366 PDGSLAASCGLDAYARVWDLRSGRLWGTL 394


>06_03_1454 -
           30261240-30261470,30261896-30262615,30262700-30262843,
           30262953-30263204,30263542-30263751
          Length = 518

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -3

Query: 507 GHLNTXTXSPDGSLCASGGKYMKAMXWDLNDG 412
           G +NT + + DGSL  SG     A+ W+  +G
Sbjct: 87  GCVNTISFNEDGSLLLSGSDDRAAVLWNWQEG 118


>06_03_0940 +
           26145746-26145879,26146740-26146821,26147349-26147427,
           26147527-26147624,26148392-26148479,26148589-26148686,
           26148881-26148982,26149237-26149281,26150535-26150574,
           26150988-26151074,26151254-26151330,26151746-26151808,
           26152650-26152766,26152905-26153116,26153690-26153785,
           26153869-26153935,26154028-26154081
          Length = 512

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -3

Query: 483 SPDGSLCASGGKYMKAMXWDLNDG 412
           SPDG   ASG +    M WDL+ G
Sbjct: 417 SPDGRYMASGDEDGTIMMWDLSSG 440


>03_05_0969 +
           29283905-29284570,29284862-29284930,29286533-29286631,
           29287016-29287324
          Length = 380

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = -3

Query: 483 SPDGSLCASGGKYMKAMXWDLNDG 412
           SPDG L AS         WDL DG
Sbjct: 71  SPDGRLIASASDDRTVRIWDLGDG 94


>03_02_0614 +
           9863622-9863675,9864353-9864604,9865125-9865268,
           9865350-9866024,9866117-9866317,9866446-9866646
          Length = 508

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -3

Query: 516 GSLGHLNTXTXSPDGSLCASGGKYMKAMXWD 424
           G  G +NT + +P G+L  SG   M  + WD
Sbjct: 32  GHDGCVNTVSFNPAGNLLVSGSDDMDIILWD 62


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,883,470
Number of Sequences: 37544
Number of extensions: 164045
Number of successful extensions: 357
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 320
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 353
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1130733700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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