Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0027.Seq
         (279 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0090 + 14367033-14367279,14367402-14368205,14368314-143700...    28   0.93 
03_03_0053 + 14109636-14109948,14110075-14110302,14112030-141121...    27   2.1  
01_01_0148 - 1337494-1338057                                           27   2.8  
01_01_1018 - 8046819-8046876,8046995-8047212,8048099-8048177,804...    26   3.7  
11_06_0259 - 21757190-21758467                                         26   4.9  
12_02_0402 - 18625023-18625808                                         25   6.5  
07_03_0794 + 21562995-21563004,21564151-21565799                       25   6.5  
03_05_0653 + 26451795-26451972,26452724-26452800,26452898-264529...    25   8.6  

>03_03_0090 +
           14367033-14367279,14367402-14368205,14368314-14370039,
           14370135-14370219,14370398-14370457,14370744-14370836
          Length = 1004

 Score = 28.3 bits (60), Expect = 0.93
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 165 INHYLGVLKTNKIEPRSYSIIPCTKYSSSILARFE 269
           I H L +LK  KI P   +I  C +YS   ++ F+
Sbjct: 819 ILHALHILKAEKIFPTESNIADCIRYSEMNISGFD 853


>03_03_0053 +
           14109636-14109948,14110075-14110302,14112030-14112181,
           14112305-14112578,14112687-14112739
          Length = 339

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = +3

Query: 153 PVIPINHYLGVLKTNKIEPRSYSIIPCTKYSSSILARFEHS 275
           P+  +  YLG+   NK+ P+ Y +  C K+ +       H+
Sbjct: 248 PIGCVPGYLGIFP-NKLSPKDYDVFGCIKWLNDFSKYHNHA 287


>01_01_0148 - 1337494-1338057
          Length = 187

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +1

Query: 64  DENTFGKCFR*CSSCDDP 117
           DE   G+CFR C +C DP
Sbjct: 72  DELEPGQCFRQCEACRDP 89


>01_01_1018 -
           8046819-8046876,8046995-8047212,8048099-8048177,
           8048455-8048540,8048698-8048983,8049063-8049205,
           8049308-8049508,8049626-8049754,8050463-8050738,
           8050823-8051098,8051364-8052364,8052452-8052634,
           8052865-8052937,8053205-8053313,8053622-8053785
          Length = 1093

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = -3

Query: 121 FLDRRKTNISESICQRCFHQSRTKVRGSKAIRY 23
           +++    N   SIC RC H S  K +  K   Y
Sbjct: 561 YVEVENGNDKSSICGRCHHLSSAKAKYQKRFSY 593


>11_06_0259 - 21757190-21758467
          Length = 425

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -2

Query: 146 SYCDVRGEILGSSQDEHQRKHLPK 75
           S+ D RG ++ S+QD   R+H P+
Sbjct: 136 SFTDDRGRLMYSNQDNWMRRHDPQ 159


>12_02_0402 - 18625023-18625808
          Length = 261

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 161 DNWGHSYCDVRGEIL 117
           D WGH + D+ GEIL
Sbjct: 6   DRWGHVHRDIFGEIL 20


>07_03_0794 + 21562995-21563004,21564151-21565799
          Length = 552

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 112 DPRISPLTSQYECPQLSLLIITSE 183
           D   +PL+SQ+EC  LS L  T +
Sbjct: 23  DSPYTPLSSQFECDNLSALTNTPD 46


>03_05_0653 +
           26451795-26451972,26452724-26452800,26452898-26452981,
           26453068-26453181,26453323-26453409,26454156-26454295,
           26454388-26454475,26455330-26455403,26455936-26456069,
           26456127-26456425,26456721-26456765
          Length = 439

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -2

Query: 125 EILGSSQDEHQRKHLPKVFSSIKNE 51
           E+L  S  +  RKH  K+   +KN+
Sbjct: 45  EVLAKSGTDQDRKHAAKILPVVKNQ 69


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,374,471
Number of Sequences: 37544
Number of extensions: 100403
Number of successful extensions: 254
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 253
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 254
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 267635896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)