Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0024.Seq
         (368 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1534 + 34200538-34200589,34200677-34200857,34201701-342018...    28   2.0  
07_01_0130 - 963856-965454                                             27   4.6  
03_01_0347 - 2730242-2730425,2730541-2730692,2730782-2730940,273...    27   6.1  
01_05_0522 - 22910849-22911399,22911797-22912181                       26   8.1  

>04_04_1534 +
           34200538-34200589,34200677-34200857,34201701-34201842,
           34201963-34202032,34202169-34202302
          Length = 192

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = -1

Query: 338 LKXGVLLWCLTYVGACFNGITLIIL 264
           +K  ++LW ++Y+G  FN +TLI +
Sbjct: 124 IKVILILWVVSYIGMLFNFLTLIYI 148


>07_01_0130 - 963856-965454
          Length = 532

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
 Frame = -3

Query: 249 FTLPKAYE---MNKAQVDANLELARAKINEITAKVRAAVPLGRRAEGDK 112
           F  P+A+E   M++     +  LA +K N  +AK RA +P+G R  GD+
Sbjct: 96  FRFPEAHEEEIMSENNDKVSYSLALSKFN--SAK-RARIPIGTRRHGDR 141


>03_01_0347 -
           2730242-2730425,2730541-2730692,2730782-2730940,
           2734144-2734618,2734713-2734775,2734870-2735078
          Length = 413

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -1

Query: 329 GVLLWCLTYVGACFNGITLIILGW 258
           G+  WC+ Y G   NG T+    W
Sbjct: 293 GLKFWCIVYSGFACNGFTVFAQLW 316


>01_05_0522 - 22910849-22911399,22911797-22912181
          Length = 311

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -3

Query: 195 ELARAKINEITAKVRAAVPLGRRAEGDK 112
           E+ R  +N+I A  R  V    RAE DK
Sbjct: 180 EVVRRAMNDINAAARLRVAAAERAEADK 207


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,908,610
Number of Sequences: 37544
Number of extensions: 69359
Number of successful extensions: 241
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 241
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 576724416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)