Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0021.Seq
         (409 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0280 + 27435166-27435254,27436348-27436437,27436764-274368...    27   5.7  
01_06_1128 - 34724469-34724699,34726103-34726213,34726301-347264...    27   7.6  

>02_05_0280 +
           27435166-27435254,27436348-27436437,27436764-27436866,
           27437318-27437377,27437745-27439148,27439227-27439328,
           27439424-27439609,27439695-27439820,27439905-27440000,
           27440509-27440574
          Length = 773

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 11/24 (45%), Positives = 19/24 (79%)
 Frame = +3

Query: 150 NTCNQNSDQ*WDECFY*IKTNRRR 221
           N+ N++SDQ   +C+Y +KTNR++
Sbjct: 741 NSLNRSSDQ-ISKCYYSLKTNRKQ 763


>01_06_1128 -
           34724469-34724699,34726103-34726213,34726301-34726409,
           34726517-34726581,34726661-34726838,34726918-34726997,
           34727838-34727961,34728064-34728172,34728299-34728461
          Length = 389

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +1

Query: 100 FLRSYSVTWITVVILELIHAIRTLTSDGMSAF 195
           F+R Y  TW  +   +L+  + TLT    S F
Sbjct: 241 FIRCYDCTWTLIDEYDLVDPVHTLTPPEESGF 272


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,678,937
Number of Sequences: 37544
Number of extensions: 166363
Number of successful extensions: 316
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 311
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 316
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 718652880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)