Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0014.Seq
         (338 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0295 + 22099791-22100030,22100681-22100797,22100886-22102616     26   8.7  
04_04_1608 - 34753321-34753332,34753434-34753628,34753868-347539...    26   8.7  
04_03_0936 + 20921918-20922409,20922807-20923199                       26   8.7  

>09_06_0295 + 22099791-22100030,22100681-22100797,22100886-22102616
          Length = 695

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +3

Query: 12  CIFGVQ-CVKLTNKVQPQYFDTYYFNIKCYYYILLEFSIKLRHYQQNICI 158
           C +  Q C K+  K +P   D +   IK  YY+  +F   L  YQQ +C+
Sbjct: 75  CSYPAQVCFKIIWKCRPLTEDEFSPAIKENYYMPWKFYFDL-SYQQVVCL 123


>04_04_1608 -
           34753321-34753332,34753434-34753628,34753868-34753972,
           34754176-34754219,34754645-34754700,34755986-34756146
          Length = 190

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +1

Query: 271 LPLFSNEYQH*V*YRKNTIKAS 336
           LPL  N+YQH + Y ++T+  S
Sbjct: 155 LPLLRNQYQHGINYSEHTLPQS 176


>04_03_0936 + 20921918-20922409,20922807-20923199
          Length = 294

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 171 DIPIISNKALRGCN*RDKLIFTSWRXH 251
           D+P +SNK + G N RD +    W  +
Sbjct: 265 DVPSLSNKMISGNNIRDMIAKKMWEDY 291


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,736,833
Number of Sequences: 37544
Number of extensions: 98115
Number of successful extensions: 177
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 470052804
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)