Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0044
         (495 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1124 + 24485181-24485645                                         28   3.6  
01_06_0655 - 30916396-30916578,30916689-30916748,30916916-309170...    28   3.6  
01_06_0243 + 27833497-27834042,27834144-27834238,27834400-27835567     28   4.7  
06_03_0273 + 19067566-19067791,19068661-19068938,19069434-19070210     27   6.3  
05_01_0241 + 1800959-1801502,1802089-1802236,1802458-1802518           27   6.3  

>08_02_1124 + 24485181-24485645
          Length = 154

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +1

Query: 337 GTGWRHPPAVFYCSWSQSHYGINL 408
           G GW+ PP VF   W +   G+ +
Sbjct: 51  GEGWKRPPGVFEFPWQKCRGGLGV 74


>01_06_0655 -
           30916396-30916578,30916689-30916748,30916916-30917032,
           30917139-30917246,30917301-30917390,30917731-30917799,
           30918086-30918178,30918292-30918384,30918540-30918621,
           30919467-30919534,30919662-30920684
          Length = 661

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +1

Query: 343 GWRHPPAVFYCSWSQSHYGI 402
           GWR    + +CSW    YG+
Sbjct: 403 GWRPRRTIIFCSWDAEEYGL 422


>01_06_0243 + 27833497-27834042,27834144-27834238,27834400-27835567
          Length = 602

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -1

Query: 381 PTAIKYCRRMAPSRPIARW 325
           P A++ C R+ PS+P ARW
Sbjct: 354 PPALRDCARINPSKPGARW 372


>06_03_0273 + 19067566-19067791,19068661-19068938,19069434-19070210
          Length = 426

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +1

Query: 352 HPPAVFYCSWSQSHY 396
           H P VFY +WS SH+
Sbjct: 297 HKPVVFYRTWSPSHF 311


>05_01_0241 + 1800959-1801502,1802089-1802236,1802458-1802518
          Length = 250

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
 Frame = +2

Query: 47  GENLKGKRDRN-----RSPLRQKLVFYHQRLLNTKTENTVLKKTRIDLVQRL 187
           GE  K KR +      R P    L    Q+LLN  +E  +LK+ RI+ ++ L
Sbjct: 99  GEKTKKKRSKKPPRPPRPPTPTPLDVSDQKLLNELSELAILKRARIERMKAL 150


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,721,740
Number of Sequences: 37544
Number of extensions: 281907
Number of successful extensions: 740
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 740
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1035514020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)