Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0042
         (596 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0040 + 19141673-19142560                                         42   5e-04
06_03_1336 - 29424470-29424897,29425243-29429653                       29   2.8  
02_01_0483 - 3467813-3467873,3468072-3468154,3468505-3468579,346...    29   2.8  
03_02_0415 - 8263459-8263611,8263788-8263919,8264841-8264936,826...    29   3.7  
05_06_0281 + 26912419-26913099                                         27   8.6  
01_06_0050 + 25967604-25967685,25967780-25967891,25969238-259693...    27   8.6  

>02_04_0040 + 19141673-19142560
          Length = 295

 Score = 41.5 bits (93), Expect = 5e-04
 Identities = 22/64 (34%), Positives = 36/64 (56%)
 Frame = +1

Query: 370 GYEQEYIILEDLTRRMLEPCIMDVKIGKRTWDPLATEEKIKNEQAKLRCASSSTVLHTRL 549
           G    +I+L+DL   +  PC+ DVKIG  TW P + +  +    AK R  ++S +L  R+
Sbjct: 84  GAPYPHIVLDDLLAGLPSPCVADVKIGACTWPPRSPDPYVAKCLAKDR-ETTSALLGFRV 142

Query: 550 PGLQ 561
            G++
Sbjct: 143 SGVR 146


>06_03_1336 - 29424470-29424897,29425243-29429653
          Length = 1612

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = +1

Query: 469 LATEEKIKNEQAKLRCASSSTVLHTRLP 552
           L+T  K  +EQ KL CA  ST+L+  LP
Sbjct: 208 LSTRTKHISEQLKLVCAKVSTILNLELP 235


>02_01_0483 -
           3467813-3467873,3468072-3468154,3468505-3468579,
           3468728-3468782,3470595-3470950
          Length = 209

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
 Frame = -3

Query: 459 CSFANFNIHDARLEHPPRQIFQNNILLFVAIVSLF-LAVEILGRAFSKFHQVRIGRCPHA 283
           CSF    IH A     P  I +  ++ F A   +  L ++  G   S  + +R+ + P  
Sbjct: 142 CSFTPITIHPASTNKSPNHILKGKLMCFHAASEMCRLPIKSDGNGGSVSYDLRVHQVPPE 201

Query: 282 LIE 274
           L++
Sbjct: 202 LVD 204


>03_02_0415 -
           8263459-8263611,8263788-8263919,8264841-8264936,
           8265021-8265137,8265352-8265435,8265517-8265577,
           8266217-8266266,8266544-8266633,8267539-8267757,
           8269207-8269262,8269469-8269546,8269707-8269811,
           8269925-8270069,8270310-8270388,8270470-8270537,
           8271550-8271626,8272676-8272712,8273107-8273232,
           8273770-8273805
          Length = 602

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 23/76 (30%), Positives = 37/76 (48%)
 Frame = +2

Query: 32  KRTKVRRQRSIYQVHYNIEKRNDELMTKPLALQKGLEIQAYDLQVAGHRKTEDTKYSGLL 211
           K TK  ++ SI Q   ++E+R  EL  + LAL+K  E++    Q+   R    +  SGL+
Sbjct: 405 KITKEAKENSILQA--SLERRKVELHKRRLALEK--EVENLRDQLQKERNLRVSLESGLM 460

Query: 212 QCSNGTILKPIIKDSR 259
               G    P   D++
Sbjct: 461 NLRRGQASFPSTIDNK 476


>05_06_0281 + 26912419-26913099
          Length = 226

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = -2

Query: 163 LQIVGLDFKPFLQGKGLRHQLVVA 92
           L +V L F P LQ + L HQ+VVA
Sbjct: 16  LHVVLLAFAPLLQARPLGHQVVVA 39


>01_06_0050 +
           25967604-25967685,25967780-25967891,25969238-25969361,
           25969486-25969527,25969622-25969735,25969843-25969905,
           25970741-25970868,25972198-25972279,25972372-25972423,
           25972515-25972612,25972845-25973006,25973484-25973573,
           25973700-25973777
          Length = 408

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = -1

Query: 554 PGSLVCRTVLLLAQRNLACSFLIFSSVASGSHVLLPILTSMMQG 423
           PG         +++ N+A S L+ +    G+ V+ P+LT ++ G
Sbjct: 198 PGGQASNVATYISKGNVALSVLMTTCSTIGAIVMTPLLTKLLAG 241


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,772,327
Number of Sequences: 37544
Number of extensions: 388477
Number of successful extensions: 939
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 939
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)