Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0038
(508 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_04_0129 + 17520753-17520842,17521651-17521741,17521887-175220... 104 5e-23
02_01_0385 + 2783387-2783695,2784149-2785082,2785206-2785309,278... 31 0.70
03_02_0829 - 11599665-11600364,11600853-11601076,11601786-116020... 30 1.2
12_01_0457 + 3601652-3601903,3603399-3603779 29 2.1
03_02_0901 + 12267042-12267182,12267949-12268095,12268163-122682... 28 5.0
05_01_0089 + 589457-589506,589598-589741,589820-589903,590118-59... 27 8.7
01_06_1208 + 35424241-35424370,35424415-35424728,35424782-354249... 27 8.7
>03_04_0129 +
17520753-17520842,17521651-17521741,17521887-17522070,
17522149-17522224
Length = 146
Score = 104 bits (249), Expect = 5e-23
Identities = 45/77 (58%), Positives = 59/77 (76%)
Frame = +1
Query: 28 TVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRHI 207
TVKDV + VK +AHLK++GK+++PE +D+VKTARFKEL PYDPDW+Y R A+I R I
Sbjct: 8 TVKDVNPHEFVKAYSAHLKRSGKMELPEWVDIVKTARFKELPPYDPDWYYTRAASIARKI 67
Query: 208 YIRSPVGVKTVTKIFGG 258
Y+R +GV KI+GG
Sbjct: 68 YLRQGIGVGGFQKIYGG 84
Score = 69.7 bits (163), Expect = 1e-12
Identities = 28/54 (51%), Positives = 42/54 (77%)
Frame = +3
Query: 255 GRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRILTTQGRRDLDRI 416
GR+RNG P HFC+SSG+I+R LQ L+ + +++ GGR++T+QGRRDLD++
Sbjct: 84 GRQRNGSRPPHFCKSSGAISRNILQQLQKMGIIDVDPKGGRLITSQGRRDLDQV 137
>02_01_0385 +
2783387-2783695,2784149-2785082,2785206-2785309,
2785402-2785486,2785517-2787578,2787732-2787753,
2788157-2788327,2791473-2791517,2792558-2793874,
2793962-2794012,2794090-2794188,2794352-2794504,
2794554-2794571
Length = 1789
Score = 30.7 bits (66), Expect = 0.70
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = -2
Query: 135 SCLYKIHVLRYLDFARFF*VS-SDSFNNLVLFNILYCDGTHLALVP 1
S +YK+ +LRYLD + S S SFN+L+ L T+L +P
Sbjct: 550 SSVYKLKLLRYLDASSLRISSFSKSFNHLLNLQALILSNTYLKTLP 595
>03_02_0829 -
11599665-11600364,11600853-11601076,11601786-11602000,
11602300-11602377,11602593-11603907
Length = 843
Score = 29.9 bits (64), Expect = 1.2
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +3
Query: 201 SYLHSLTCWSQDCHQDLRGRK 263
SYLHSL W C + LRG+K
Sbjct: 673 SYLHSLNSWLLKCVKPLRGKK 693
>12_01_0457 + 3601652-3601903,3603399-3603779
Length = 210
Score = 29.1 bits (62), Expect = 2.1
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Frame = +1
Query: 208 YIRSPVGVKTVTKIFGGANVMELHLHISAG-----HQAVLHARLCNRW 336
Y+ S ++ ++FGG L LH+ G HQ V+ + +RW
Sbjct: 100 YVPSGTTGVSIMQVFGGGTATTLMLHVYGGDLWYYHQQVVETNIYDRW 147
>03_02_0901 + 12267042-12267182,12267949-12268095,12268163-12268253,
12268367-12268485,12268779-12268969,12269440-12269650,
12270072-12270309,12270944-12271329,12271933-12271956,
12271984-12272077,12272341-12272525,12273025-12273255,
12273665-12273730,12273816-12274034,12274764-12275003,
12275244-12275423,12276269-12276535,12276612-12276815,
12276896-12277048
Length = 1128
Score = 27.9 bits (59), Expect = 5.0
Identities = 19/70 (27%), Positives = 33/70 (47%)
Frame = +1
Query: 1 RHEGKMRSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYV 180
R +G+ + +D+I+ + ++ V+VP + +LV TA L P D W +
Sbjct: 932 RRKGESIDGIARCTFEDRILMSDIVFMRAWVNVEVPTYCNLVTTA----LQPQDETWQGM 987
Query: 181 RCAAILRHIY 210
R A LR +
Sbjct: 988 RTTAELRRAH 997
>05_01_0089 +
589457-589506,589598-589741,589820-589903,590118-590261,
590351-590401,590492-590641,591175-591488,592685-592815,
593131-593451,594994-595057,595322-595443
Length = 524
Score = 27.1 bits (57), Expect = 8.7
Identities = 12/54 (22%), Positives = 26/54 (48%)
Frame = +1
Query: 13 KMRSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWF 174
++ ++ V D +++ + + H K TG ++ E+ ++ L PY D F
Sbjct: 224 EVAALIVNDTSENQKGRDIIVHYKDTGPRRISENHPKFMAMQYPLLFPYGEDGF 277
>01_06_1208 +
35424241-35424370,35424415-35424728,35424782-35424967,
35425361-35425523,35425601-35425787,35425875-35426016
Length = 373
Score = 27.1 bits (57), Expect = 8.7
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -2
Query: 372 HRPELSQQASMPPTIAKPCVQYCLMTCRN 286
H + + + P TIA+ +QYCL TC N
Sbjct: 116 HPTQDPEATNSPFTIAQLQLQYCLHTCTN 144
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,192,055
Number of Sequences: 37544
Number of extensions: 262871
Number of successful extensions: 684
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 684
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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