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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0027
         (787 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0433 - 22891261-22891509,22892181-22892301,22892405-228924...    66   4e-11
04_04_0211 - 23636377-23636532,23636624-23636805,23637853-236379...    64   1e-10
05_07_0258 - 28729620-28729782,28730193-28730339,28730808-287310...    30   2.4  
02_02_0470 - 10700092-10700505                                         30   2.4  
01_06_1446 - 37409074-37409783,37409896-37409986,37410645-374119...    29   3.2  
10_08_0951 - 21769342-21769752                                         29   5.5  
11_06_0284 + 21909758-21913645                                         28   7.3  

>02_04_0433 -
           22891261-22891509,22892181-22892301,22892405-22892496,
           22892692-22892755,22892855-22892920,22893102-22893193,
           22893991-22894050,22894181-22894270,22894484-22894613,
           22895066-22895157,22895299-22895373,22895663-22895754,
           22896496-22896586,22897541-22897574,22897745-22897791,
           22899110-22899209,22899300-22899436,22900837-22901015,
           22901146-22901188,22901264-22901297,22901839-22901948,
           22902043-22902224,22903062-22903168,22903266-22903480
          Length = 833

 Score = 65.7 bits (153), Expect = 4e-11
 Identities = 37/77 (48%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
 Frame = +2

Query: 287 FYPTQE-KIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLV 463
           FYP  + K RA S  +    +  ++R  +  GTV ILLAGR+ GKRVV +  L SGLLL+
Sbjct: 50  FYPADDVKPRAPSTRKA---NPTKLRSTITPGTVLILLAGRYMGKRVVFLKQLKSGLLLI 106

Query: 464 TGPFAFNSCPLRRIPSA 514
           TGPF  N  P+RR+  A
Sbjct: 107 TGPFKINGVPIRRVNQA 123



 Score = 48.0 bits (109), Expect = 8e-06
 Identities = 37/96 (38%), Positives = 50/96 (52%), Gaps = 2/96 (2%)
 Frame = +1

Query: 472 FCIQFVPATPYS*RYVIGTSTRISLGNFKLPKHFNDDYFXXXXXXXXXXXXXXEGDDIFA 651
           F I  VP    +  YVI TST++ +   K+ K F+D YF              EG+ +F 
Sbjct: 110 FKINGVPIRRVNQAYVIATSTKVDISGVKVDK-FDDKYFARDKKAKAKKT---EGE-LFE 164

Query: 652 TKKE--KYVPSEQRKTDQKTVDEAVIKAIGARPDKK 753
           T+KE  K +P + +K DQK VD  +IKAI   PD K
Sbjct: 165 TEKEATKNLP-DFKKDDQKAVDAELIKAIEVVPDLK 199


>04_04_0211 -
           23636377-23636532,23636624-23636805,23637853-23637959,
           23637997-23638280
          Length = 242

 Score = 64.1 bits (149), Expect = 1e-10
 Identities = 36/73 (49%), Positives = 47/73 (64%), Gaps = 2/73 (2%)
 Frame = +2

Query: 293 PTQEKIRASSGGRPFS--KHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVT 466
           PT+ +  +SS    FS  + +  +R ++  GTV ILLAGR  GKRVV +  L SGLLLVT
Sbjct: 71  PTKLRSPSSSNLPEFSLFRFILLMRSSITPGTVLILLAGRFMGKRVVFLKQLKSGLLLVT 130

Query: 467 GPFAFNSCPLRRI 505
           GPF  N  P+RR+
Sbjct: 131 GPFKINGVPIRRV 143



 Score = 48.4 bits (110), Expect = 6e-06
 Identities = 38/96 (39%), Positives = 50/96 (52%), Gaps = 2/96 (2%)
 Frame = +1

Query: 472 FCIQFVPATPYS*RYVIGTSTRISLGNFKLPKHFNDDYFXXXXXXXXXXXXXXEGDDIFA 651
           F I  VP    +  YVI TST++ +    + K F+D YF              EG+ +F 
Sbjct: 133 FKINGVPIRRVNQPYVIATSTKVDISGVNVEK-FDDKYFSRDKKQKAKKT---EGE-LFE 187

Query: 652 TKKE--KYVPSEQRKTDQKTVDEAVIKAIGARPDKK 753
           T+KE  K +P E +K DQK VD  +IKAI A PD K
Sbjct: 188 TEKEATKNLP-EFKKEDQKVVDAELIKAIEAVPDLK 222


>05_07_0258 -
           28729620-28729782,28730193-28730339,28730808-28731032,
           28731148-28731178,28731424-28731940
          Length = 360

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
 Frame = -1

Query: 433 NKYNPLACMSTSEENANSSYLQVGSDPAYMLAEWTATR*GTDFLLSGVEGLPTFEGYCSG 254
           N Y     + TS + A ++ L   +DP+    ++ +T  G   L +     P F GY + 
Sbjct: 147 NSYYQKNPVQTSCDFAGTAIL-TSTDPSSSSCKYPSTSTGASVLNTSTPTNPAFGGYDNS 205

Query: 253 PPFF---SPPI 230
           PP F   SPP+
Sbjct: 206 PPGFGNNSPPL 216


>02_02_0470 - 10700092-10700505
          Length = 137

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +2

Query: 368 LKIGTVCILLAGRHAGKRVVLVGILPSG 451
           LK G   ILL GR+AG++ V+V +   G
Sbjct: 5   LKPGKAVILLQGRYAGRKAVIVRVFEEG 32


>01_06_1446 -
           37409074-37409783,37409896-37409986,37410645-37411988,
           37412062-37412709,37412801-37412852,37413141-37413214,
           37414370-37414419,37414488-37414569,37414779-37414828,
           37414907-37414949,37415030-37415110,37415198-37415243,
           37415336-37415382,37415467-37415532,37415612-37415678,
           37415761-37415858
          Length = 1182

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 24/81 (29%), Positives = 36/81 (44%)
 Frame = +2

Query: 542 HSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIRRQSMRL* 721
           HS+  +  + S  +TSR   SA  +    KR   S P K  +     S K   +Q     
Sbjct: 430 HSSDISSSSKSSEVTSRE--SAKVICEPVKRAQASPPLKHLSPIVEHSPKAKIKQD---- 483

Query: 722 SKPLEPDPTRRCSAILKAAFG 784
            +PL+PDP ++    + AA G
Sbjct: 484 -EPLQPDPAKQAMEDVDAAVG 503


>10_08_0951 - 21769342-21769752
          Length = 136

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +2

Query: 368 LKIGTVCILLAGRHAGKRVVLVGILPSG 451
           LK G   ILL GR AG++ V+V +   G
Sbjct: 5   LKPGKAVILLQGRFAGRKAVIVRVFEEG 32


>11_06_0284 + 21909758-21913645
          Length = 1295

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +1

Query: 649 ATKKEKYVPSEQRKTDQKTVDEAVIKAIGARPDKKVLRDTQGG 777
           A ++E+    +  KT   T+DE  IK +     + +LR+ QGG
Sbjct: 574 AQQQERLAAKQATKTATTTLDEERIKQMINEAKQDILRELQGG 616


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,603,765
Number of Sequences: 37544
Number of extensions: 494463
Number of successful extensions: 1251
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1249
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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