Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0025
         (832 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0148 - 5928703-5928931,5929099-5929171,5929288-5929408,592...    30   2.6  
07_03_0464 + 18456502-18456697,18457281-18457368,18457448-184575...    29   3.4  
06_03_0677 - 23440273-23440749,23440824-23440985,23442007-23442627     29   3.4  
01_07_0083 + 40970890-40971015,40971886-40971994,40972679-409727...    29   3.4  
08_02_0075 - 11953723-11956203,11958213-11958512                       29   4.5  
09_04_0551 - 18488584-18490017                                         29   6.0  

>03_02_0148 -
           5928703-5928931,5929099-5929171,5929288-5929408,
           5929907-5929952,5930361-5930571,5930837-5930986,
           5931122-5931179,5931285-5931400,5931986-5932091
          Length = 369

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +1

Query: 187 NVFQYIKYIKASDGFFGCYRGLS 255
           N+FQ I+ +  SDG  G YRG+S
Sbjct: 78  NIFQMIRTVWVSDGLKGFYRGIS 100


>07_03_0464 +
           18456502-18456697,18457281-18457368,18457448-18457524,
           18457844-18457883,18458109-18458175,18458908-18458993,
           18459380-18459461,18459778-18459834,18460135-18460173,
           18460402-18460472,18460912-18461047,18461048-18461092
          Length = 327

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +1

Query: 694 YNKHNNIS-NGCGIYLYGSSWF*FKAGNPPAM-PNYPSWQV 810
           YN+H  +   G GIY  G SW+  ++G+   M P  P W V
Sbjct: 248 YNQHGLLLLEGQGIYRLGDSWYPVQSGDTIWMAPFVPQWLV 288


>06_03_0677 - 23440273-23440749,23440824-23440985,23442007-23442627
          Length = 419

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 178 ILPNVFQYIKYIKASDGFFGCYRGLSQECLVLSP 279
           +  NVF  +  I  ++G  G Y+GL   C+ L P
Sbjct: 362 VYKNVFHALYCIMENEGIGGLYKGLGPSCIKLMP 395


>01_07_0083 +
           40970890-40971015,40971886-40971994,40972679-40972790,
           40972944-40973100,40973609-40973761,40974143-40974292,
           40974803-40974999,40975446-40975473
          Length = 343

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 17/66 (25%), Positives = 29/66 (43%)
 Frame = +1

Query: 82  CHPMEYAKVLIQLGYEPLAPRRSTTLFGRPAMILPNVFQYIKYIKASDGFFGCYRGLSQE 261
           CHP++  K   Q+      PR    +    +     ++  +K I A +GF G Y+GL   
Sbjct: 258 CHPLDVVKKRFQIEGLKRHPRYGARI---ESSTYKGMYHALKEIVAKEGFGGLYKGLFPS 314

Query: 262 CLVLSP 279
            +  +P
Sbjct: 315 LVKSAP 320


>08_02_0075 - 11953723-11956203,11958213-11958512
          Length = 926

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = +2

Query: 527 SIYKDDGILGFLHGLIPKVLGDLTCLAVTGVLAYYVNKYFVKTKD-LRYYTIPLLT 691
           SI ++D     L  +   VLG L CL + GV     +  FVKT + +RY  +  LT
Sbjct: 553 SIERNDNFEEKLDAVQDNVLGSLECLILAGVYDENYSAKFVKTLERVRYVRMLQLT 608


>09_04_0551 - 18488584-18490017
          Length = 477

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +3

Query: 279 ASQLTSKVIVAVGID-LPEINDPPNIVTDDEPKVEDYIKLGRR 404
           A  ++SK    V    LP I DPP++  DD+    +Y  L RR
Sbjct: 54  ARAVSSKSSATVSFHMLPRIPDPPSLAFDDDKFFTNYFDLVRR 96


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,159,878
Number of Sequences: 37544
Number of extensions: 534077
Number of successful extensions: 1282
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1282
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2291695380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)