Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0019
         (828 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0144 + 26258841-26258948,26259099-26259212,26259335-262595...    31   1.5  
01_07_0106 - 41107673-41107942,41108362-41108574,41108877-411090...    29   6.0  

>02_05_0144 +
           26258841-26258948,26259099-26259212,26259335-26259556,
           26259660-26259734,26259827-26259943,26260046-26260296,
           26260833-26260908,26261045-26261131,26261216-26261401
          Length = 411

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +2

Query: 332 YMKNVFDKICDMCPFRNCSI 391
           YMKN F  I DMC  +NC++
Sbjct: 369 YMKNAFQNIKDMCKSQNCNL 388


>01_07_0106 -
           41107673-41107942,41108362-41108574,41108877-41109041,
           41109431-41109649,41110205-41110324,41110427-41110489,
           41111034-41111606,41111691-41111858,41112414-41112495,
           41112667-41112743,41113031-41113101,41114315-41114363
          Length = 689

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -2

Query: 491 CATHLEINSKVSSIVRTLNKSIVFRYWV 408
           C T LEI+ KV SI +TL  +I + +++
Sbjct: 435 CITPLEISDKVKSIYKTLQAAIRYLFFI 462


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,413,547
Number of Sequences: 37544
Number of extensions: 402859
Number of successful extensions: 740
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 740
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2279943096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)