Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30035
         (649 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0697 - 5948664-5948770,5949077-5949563                           29   3.2  
01_07_0248 + 42261373-42261609,42261733-42261905,42261986-422620...    28   7.4  

>12_01_0697 - 5948664-5948770,5949077-5949563
          Length = 197

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 19/86 (22%), Positives = 37/86 (43%)
 Frame = +3

Query: 72  DLSLGQLTYRDIVLYKINEYKYGFPFIVRTSEIEYPEPGQQNFAYISAIYVKDHYTDGNG 251
           D+ +  +    +  Y I+E +    F +   +  + +P + N  ++  +Y K H  DG  
Sbjct: 34  DMDVNMVCMLPMEFYAIDEAEVA-QFSLGPKDAVFEKPDESN-RHMKPLYFKGHI-DGKP 90

Query: 252 GYPIVKSGGVGQKFVKLKLKSQRGHG 329
              ++  GG    F+   L  + GHG
Sbjct: 91  VSRMLVDGGAAMNFMPYSLFKKLGHG 116


>01_07_0248 + 42261373-42261609,42261733-42261905,42261986-42262058,
            42262148-42262282,42262352-42262562,42262886-42263034,
            42263169-42263267,42263821-42263989,42264176-42264308,
            42264600-42264694,42264774-42264882,42265136-42265295,
            42265433-42265594,42265814-42265985,42266254-42266402,
            42266914-42266951,42267779-42267839,42267913-42268155,
            42268233-42268315,42269521-42269609,42270449-42270495,
            42270576-42270656,42270737-42270899,42271077-42271267,
            42271691-42271762
          Length = 1097

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = +2

Query: 56   QRPKPRPKSRPADLPRHRLVQDQRIQI--RLPVHCPNER 166
            QR +P P+ +PA  PR R   ++RI+   R P   P  R
Sbjct: 1007 QRREPSPRRKPASPPRKRTPPNRRIESPRRQPDPSPRRR 1045


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,965,410
Number of Sequences: 37544
Number of extensions: 287039
Number of successful extensions: 990
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 879
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 989
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)