Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30026
         (311 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0270 + 1969199-1969714                                           27   2.3  
11_01_0227 + 1767191-1767847                                           25   9.5  
07_03_0162 - 14565165-14565350,14565757-14566131,14566287-14566922     25   9.5  
04_01_0158 - 1801724-1801951,1802047-1803078                           25   9.5  

>12_01_0270 + 1969199-1969714
          Length = 171

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 76  HDRCSYSLLRLSFLYPGCRY 135
           H RC +S LR+S + P CR+
Sbjct: 125 HQRCIFSWLRISRICPVCRF 144


>11_01_0227 + 1767191-1767847
          Length = 218

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +1

Query: 76  HDRCSYSLLRLSFLYPGCRYGIQGLIQV 159
           H+ C +  LR S L P CRY +    QV
Sbjct: 188 HENCLFRWLRDSCLCPLCRYALPKQQQV 215


>07_03_0162 - 14565165-14565350,14565757-14566131,14566287-14566922
          Length = 398

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -3

Query: 225 QR*NCIANRWQRPNYLKACLKVHLNK 148
           +R +CIA+ WQR  Y +  L++HL K
Sbjct: 38  ERADCIASLWQRRTYDR--LRLHLPK 61


>04_01_0158 - 1801724-1801951,1802047-1803078
          Length = 419

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -3

Query: 225 QR*NCIANRWQRPNYLKACLKVHLNK 148
           +R +CIA+ WQ+  Y +  LK+HL K
Sbjct: 50  ERADCIASLWQKRTYDR--LKLHLPK 73


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,381,761
Number of Sequences: 37544
Number of extensions: 118848
Number of successful extensions: 214
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 388087168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)