Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30049
         (782 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1283 - 32373774-32373821,32373834-32373958,32375717-32376227    130   9e-31
03_05_0805 - 27839576-27839667,27839763-27839823,27840082-278401...    58   8e-09
11_05_0016 - 18410889-18411104,18411326-18411381,18412883-184130...    47   2e-05
10_08_0529 - 18565749-18565804,18566022-18566128,18566206-185664...    31   0.78 
11_02_0063 + 7916048-7917135,7917225-7918690,7920177-7920238,792...    29   3.2  
11_06_0203 + 21186905-21187986,21189022-21189398,21189735-21189850     29   4.2  

>04_04_1283 - 32373774-32373821,32373834-32373958,32375717-32376227
          Length = 227

 Score =  130 bits (315), Expect = 9e-31
 Identities = 62/87 (71%), Positives = 68/87 (78%)
 Frame = +1

Query: 244 ALQLLCLPENYQMKYYFYHGLSWPQLSYVAEDEKGHIVGYVLAKMEEDGEDNRHGHITSL 423
           A  L+CLPENYQMKYY YH LSWPQL +VAED  G IVGYVLAKMEED  +  HGHITSL
Sbjct: 17  ACNLMCLPENYQMKYYLYHMLSWPQLLFVAEDYGGRIVGYVLAKMEEDPSEPCHGHITSL 76

Query: 424 AVKRSHRRLGLAQKLMNQASLAMVECF 504
           AV RSHR+LGLA KLM+ A  AM + F
Sbjct: 77  AVLRSHRKLGLATKLMSAAQAAMDQVF 103



 Score = 75.4 bits (177), Expect = 5e-14
 Identities = 32/51 (62%), Positives = 42/51 (82%)
 Frame = +3

Query: 498 MLSGKYVSLHVRKSNRAALNLYTNSLGFKILEIEPKYYADGEDAYSMMRDL 650
           +   +YVSLHVR+SNRAA NLYT++LG++I ++E KYYADGEDAY M + L
Sbjct: 102 VFGAEYVSLHVRRSNRAAFNLYTSTLGYQIHDVEAKYYADGEDAYDMRKPL 152


>03_05_0805 -
           27839576-27839667,27839763-27839823,27840082-27840151,
           27841167-27841299,27841928-27842018,27842097-27842174
          Length = 174

 Score = 58.0 bits (134), Expect = 8e-09
 Identities = 26/71 (36%), Positives = 41/71 (57%)
 Frame = +1

Query: 262 LPENYQMKYYFYHGLSWPQLSYVAEDEKGHIVGYVLAKMEEDGEDNRHGHITSLAVKRSH 441
           L E + M +Y  +   WP   + A      ++GY++ K+E  GE + HGH+T+++V    
Sbjct: 23  LTETFNMSFYMTYMARWPDYFHAAVSPGDRVMGYIMGKVEGQGE-SWHGHVTAVSVATEF 81

Query: 442 RRLGLAQKLMN 474
           RR  LA+KLMN
Sbjct: 82  RRQKLAKKLMN 92



 Score = 32.7 bits (71), Expect = 0.34
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = +3

Query: 513 YVSLHVRKSNRAALNLYTNSLGFKILEIEPKYYADGEDAYSMMRDLS 653
           +V L VR SN  A+ +Y   LG+ +     +YY+  ED   M + LS
Sbjct: 106 FVDLFVRASNMPAIRMY-EKLGYVVYRRVLRYYSGEEDGLDMRKALS 151


>11_05_0016 -
           18410889-18411104,18411326-18411381,18412883-18413009,
           18413113-18413307
          Length = 197

 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 30/80 (37%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
 Frame = +1

Query: 262 LPENYQMKYYFYHGLSWPQLSYVAEDEK-GHIVGYVLAKMEEDGEDNRHGHITSLAVKRS 438
           L E Y +  Y Y    WPQL+++A D K G  VG V+ KM E     R G+I  L V + 
Sbjct: 43  LSEPYSIFTYRYFVYLWPQLTFLAFDPKDGKCVGTVVCKMGEHRGAFR-GYIAMLVVLKP 101

Query: 439 HRRLGLAQKLMNQASLAMVE 498
           +R  G+A +L+ ++   M+E
Sbjct: 102 YRGRGIATELVTRSIRVMME 121


>10_08_0529 -
           18565749-18565804,18566022-18566128,18566206-18566410,
           18566500-18566812
          Length = 226

 Score = 31.5 bits (68), Expect = 0.78
 Identities = 18/41 (43%), Positives = 23/41 (56%)
 Frame = +3

Query: 516 VSLHVRKSNRAALNLYTNSLGFKILEIEPKYYADGEDAYSM 638
           VSLHV  +  AA+ LY  + GF++      YYA   DAY M
Sbjct: 134 VSLHVDPARAAAVALYRKA-GFQVDATVVGYYAPRRDAYRM 173


>11_02_0063 +
           7916048-7917135,7917225-7918690,7920177-7920238,
           7921808-7922407
          Length = 1071

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 13/33 (39%), Positives = 22/33 (66%)
 Frame = +1

Query: 415 TSLAVKRSHRRLGLAQKLMNQASLAMVECFQEN 513
           T + VKRS+ RLG+ ++  N+ S+ M+E   +N
Sbjct: 854 TYVQVKRSNGRLGVYKEFSNEVSMLMLEADPQN 886


>11_06_0203 + 21186905-21187986,21189022-21189398,21189735-21189850
          Length = 524

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -3

Query: 690 SHXCQFYYQLQKHSDLASWNMHLL 619
           +H C FYY+LQ++SD+    + L+
Sbjct: 500 AHTCIFYYKLQRNSDIQETKVQLV 523


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,903,966
Number of Sequences: 37544
Number of extensions: 355133
Number of successful extensions: 762
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 761
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)