Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30045
         (396 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0263 + 2136858-2137331                                          102   9e-23
12_01_0323 - 2459854-2460306                                          102   1e-22
11_01_0317 - 2365493-2365786,2365825-2365953                           69   1e-12
10_08_0260 - 16290798-16290893,16292284-16292570,16293248-162939...    28   3.1  
09_06_0198 - 21496692-21496991,21497111-21497258,21497341-214975...    26   9.6  

>01_01_0263 + 2136858-2137331
          Length = 157

 Score =  102 bits (245), Expect = 9e-23
 Identities = 51/73 (69%), Positives = 61/73 (83%)
 Frame = +1

Query: 37  MKFNKQVTSSRRKNRKRHFSAPSHIXRVXMSSPLSKELRXKFNVKSMPIRKDDEVQVVRG 216
           MK N +VTSSRRK RK HF+APS + RV MS+ LS ELR K+NV+S+PIRKDDEVQVVRG
Sbjct: 1   MKRNPRVTSSRRKCRKAHFTAPSSVRRVLMSAALSSELRHKYNVRSIPIRKDDEVQVVRG 60

Query: 217 HYKGQQVGKVMQV 255
            YKG++ GKV+QV
Sbjct: 61  SYKGRE-GKVVQV 72



 Score = 68.9 bits (161), Expect = 1e-12
 Identities = 29/47 (61%), Positives = 39/47 (82%)
 Frame = +3

Query: 255 YRKKFVVYIERIXRXXANGATAYVGIHPSKCVIVKLKMNKDRKAILD 395
           YR+++V+++ERI R   NG+T  VGIHPSK V+ KLK++KDRKAILD
Sbjct: 73  YRRRWVIHVERITREKVNGSTVNVGIHPSKVVVTKLKLDKDRKAILD 119


>12_01_0323 - 2459854-2460306
          Length = 150

 Score =  102 bits (244), Expect = 1e-22
 Identities = 51/73 (69%), Positives = 61/73 (83%)
 Frame = +1

Query: 37  MKFNKQVTSSRRKNRKRHFSAPSHIXRVXMSSPLSKELRXKFNVKSMPIRKDDEVQVVRG 216
           MK N +VTSSRRK RK HF+APS + RV MS+ LS ELR K+NV+S+PIRKDDEVQVVRG
Sbjct: 1   MKRNPRVTSSRRKCRKAHFTAPSSVRRVLMSAALSTELRHKYNVRSIPIRKDDEVQVVRG 60

Query: 217 HYKGQQVGKVMQV 255
            YKG++ GKV+QV
Sbjct: 61  SYKGRE-GKVVQV 72



 Score = 68.9 bits (161), Expect = 1e-12
 Identities = 29/47 (61%), Positives = 39/47 (82%)
 Frame = +3

Query: 255 YRKKFVVYIERIXRXXANGATAYVGIHPSKCVIVKLKMNKDRKAILD 395
           YR+++V+++ERI R   NG+T  VGIHPSK V+ KLK++KDRKAILD
Sbjct: 73  YRRRWVIHVERITREKVNGSTVNVGIHPSKVVVTKLKLDKDRKAILD 119


>11_01_0317 - 2365493-2365786,2365825-2365953
          Length = 140

 Score = 68.9 bits (161), Expect = 1e-12
 Identities = 29/47 (61%), Positives = 39/47 (82%)
 Frame = +3

Query: 255 YRKKFVVYIERIXRXXANGATAYVGIHPSKCVIVKLKMNKDRKAILD 395
           YR+++V+++ERI R   NG+T  VGIHPSK V+ KLK++KDRKAILD
Sbjct: 60  YRRRWVIHVERITREKVNGSTVNVGIHPSKVVVTKLKLDKDRKAILD 106



 Score = 64.9 bits (151), Expect = 2e-11
 Identities = 40/73 (54%), Positives = 48/73 (65%)
 Frame = +1

Query: 37  MKFNKQVTSSRRKNRKRHFSAPSHIXRVXMSSPLSKELRXKFNVKSMPIRKDDEVQVVRG 216
           MK N +VTSSRRK RK HF+APS + RV MS+ LS ELR K+N             VVRG
Sbjct: 1   MKRNPRVTSSRRKCRKAHFTAPSSVRRVLMSAALSTELRHKYN-------------VVRG 47

Query: 217 HYKGQQVGKVMQV 255
            YKG++ GKV+QV
Sbjct: 48  SYKGRE-GKVVQV 59


>10_08_0260 -
           16290798-16290893,16292284-16292570,16293248-16293901,
           16294999-16295546,16295900-16295961,16296062-16296481
          Length = 688

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 16/59 (27%), Positives = 26/59 (44%)
 Frame = +3

Query: 210 TWTLQRPTGWQSDAGYRKKFVVYIERIXRXXANGATAYVGIHPSKCVIVKLKMNKDRKA 386
           +W L  PT   + +  RK  ++ IE+  R        Y GI P    + KL   + +K+
Sbjct: 513 SWALNFPTSCLTPSHRRKCALIEIEKNMRQAGKSLKEYAGIEPPN--MAKLNQTEHQKS 569


>09_06_0198 - 21496692-21496991,21497111-21497258,21497341-21497578,
            21497679-21497889,21497977-21498170,21498263-21498364,
            21498525-21499879,21501193-21501494,21501600-21501750,
            21501838-21502102,21502155-21502362,21502467-21502660,
            21502749-21502850,21503481-21503680,21504010-21504846,
            21505806-21506107,21506209-21506359,21506447-21506684,
            21506764-21506971,21507078-21507271,21507322-21507462,
            21513484-21514811,21515923-21516227,21516331-21516481,
            21516570-21516807,21516881-21517088,21517197-21517366,
            21517451-21517549,21517708-21519029,21521601-21521683
          Length = 3314

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +3

Query: 12   CRFGEERQNEVQ-QAGDFLKKEKQEEAFQCSFTYXASVDVLSP 137
            C FG E  N  +  +G F +  +++EA QC   + A   ++SP
Sbjct: 1184 CLFGFEPANAAEWNSGRFSQGCRRKEAVQCGDRFLAVPGMISP 1226


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,689,067
Number of Sequences: 37544
Number of extensions: 174155
Number of successful extensions: 338
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 338
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 684860244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)