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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30033
         (326 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_1086 - 9930311-9931993                                           27   2.6  
05_03_0216 + 10370531-10371922,10378656-10378808                       27   2.6  
12_02_0277 + 16682836-16684368                                         26   8.0  
12_02_0275 + 16662206-16663738                                         26   8.0  
10_01_0300 - 3257584-3258825                                           26   8.0  
08_02_0235 + 14627648-14628889                                         26   8.0  
08_01_0732 - 6672839-6672937,6672990-6673571,6673755-6674417           26   8.0  
07_03_1512 + 27288779-27289222,27298101-27298399,27298499-272985...    26   8.0  
07_01_1133 - 10550799-10551137,10552195-10552254,10555693-105574...    26   8.0  
07_01_1081 + 9831606-9832499                                           26   8.0  
04_01_0293 + 3881375-3883698,3906619-3907636,3907820-3908309,391...    26   8.0  
03_05_0186 + 21731294-21732277                                         26   8.0  

>07_01_1086 - 9930311-9931993
          Length = 560

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +2

Query: 5   VCKRTNYKNEKPLSLLLPLEI 67
           VC+R   +++KP SLL PL+I
Sbjct: 174 VCQRVKAEHQKPASLLQPLKI 194


>05_03_0216 + 10370531-10371922,10378656-10378808
          Length = 514

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +2

Query: 5   VCKRTNYKNEKPLSLLLPLEI 67
           VC+R   +++KP SLL PL+I
Sbjct: 160 VCQRVKAEHQKPASLLQPLKI 180


>12_02_0277 + 16682836-16684368
          Length = 510

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -3

Query: 168 PNRLEKHDETSVCMLLIFKSIIDNSKNGVTQNRIISK 58
           P R++KH E S C L  FK ++  S   +T++ +  +
Sbjct: 383 PGRMDKHIEMSYCRLDAFK-VLAKSYLDITEHSLFGE 418


>12_02_0275 + 16662206-16663738
          Length = 510

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -3

Query: 168 PNRLEKHDETSVCMLLIFKSIIDNSKNGVTQNRIISK 58
           P R++KH E S C L  FK ++  S   +T++ +  +
Sbjct: 383 PGRMDKHIEMSYCRLDAFK-VLAKSYLDITEHSLFGE 418


>10_01_0300 - 3257584-3258825
          Length = 413

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +2

Query: 5  VCKRTNYKNEKPLSLLLPLEI 67
          VC+R   +++KP  LL PL+I
Sbjct: 27 VCQRVKAEHQKPAGLLQPLKI 47


>08_02_0235 + 14627648-14628889
          Length = 413

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +2

Query: 5  VCKRTNYKNEKPLSLLLPLEI 67
          VC+R   +++KP  LL PL+I
Sbjct: 27 VCQRVKAEHQKPAGLLQPLKI 47


>08_01_0732 - 6672839-6672937,6672990-6673571,6673755-6674417
          Length = 447

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +2

Query: 5   VCKRTNYKNEKPLSLLLPLEI 67
           VC+R   +++KP  LL PL+I
Sbjct: 160 VCQRVKAEHQKPAGLLQPLKI 180


>07_03_1512 + 27288779-27289222,27298101-27298399,27298499-27298589,
            27298701-27298766,27299151-27302660,27311604-27312224
          Length = 1676

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +2

Query: 5    VCKRTNYKNEKPLSLLLPLEI 67
            VC+R   +++KP  LL PL+I
Sbjct: 1391 VCQRVKAEHQKPAGLLQPLKI 1411


>07_01_1133 -
           10550799-10551137,10552195-10552254,10555693-10557401,
           10557534-10557616,10577533-10578074
          Length = 910

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +2

Query: 5   VCKRTNYKNEKPLSLLLPLEI 67
           VC+R   +++KP  LL PL+I
Sbjct: 446 VCQRVKAEHQKPAGLLQPLKI 466


>07_01_1081 + 9831606-9832499
          Length = 297

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +2

Query: 5   VCKRTNYKNEKPLSLLLPLEI 67
           VC+R   +++KP  LL PL+I
Sbjct: 79  VCQRVKAEHQKPAGLLQPLKI 99


>04_01_0293 + 3881375-3883698,3906619-3907636,3907820-3908309,
            3914729-3914823,3914854-3915213
          Length = 1428

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +2

Query: 5    VCKRTNYKNEKPLSLLLPLEI 67
            VC+R   +++KP  LL PL+I
Sbjct: 1053 VCQRVKAEHQKPAGLLQPLKI 1073


>03_05_0186 + 21731294-21732277
          Length = 327

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +2

Query: 5  VCKRTNYKNEKPLSLLLPLEI 67
          VC+R   +++KP  LL PL+I
Sbjct: 27 VCQRVKAEHQKPAGLLQPLKI 47


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,014,710
Number of Sequences: 37544
Number of extensions: 109771
Number of successful extensions: 236
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 236
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 435246480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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