Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30024
         (675 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0048 + 331155-333077,333208-333354,333540-334087,334481-33...    30   1.5  
07_01_0445 - 3365244-3366227                                           29   4.5  

>05_01_0048 +
           331155-333077,333208-333354,333540-334087,334481-334616
          Length = 917

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -3

Query: 247 HGLSLREFANTSPSKSNDLLNLPLD*FHYNPCNIR 143
           HGLS  + A  + +K+N+LLN  +D  H    N+R
Sbjct: 612 HGLSFSKSATDNLAKTNELLNQEIDRLHAQVDNLR 646


>07_01_0445 - 3365244-3366227
          Length = 327

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +3

Query: 297 ANRSRLMVISYFSGSGLCLPSQR 365
           AN +R+ V++YF G G C+ S R
Sbjct: 71  ANDARVPVVAYFHGGGFCIGSGR 93


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,060,042
Number of Sequences: 37544
Number of extensions: 256012
Number of successful extensions: 430
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 430
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)