Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30011
         (413 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0890 + 24040981-24041125,24041264-24041317,24042675-240428...    29   1.9  
08_02_1101 - 24308433-24308978,24309195-24309364,24309443-243095...    27   5.9  
03_05_0751 - 27389910-27392105                                         27   5.9  
09_02_0057 - 3697255-3698116,3698191-3698351,3698442-3698636,369...    27   7.8  

>12_02_0890 +
           24040981-24041125,24041264-24041317,24042675-24042872,
           24043367-24043635
          Length = 221

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 14/53 (26%), Positives = 25/53 (47%)
 Frame = +1

Query: 115 HGLAGHHYSIAKRHRT*PTEPSHVCLKCRKIKMKYAS*TTNSIFYLR*HLKNQ 273
           +G   HH       +  P++    C+ C K+   Y + +TN   +LR HL ++
Sbjct: 148 NGCGAHHLGKENMEKDQPSKDMATCVHCSKV---YTAKSTNGTSHLRRHLTSK 197


>08_02_1101 -
           24308433-24308978,24309195-24309364,24309443-24309542,
           24310337-24310500,24310960-24310996,24311222-24311262,
           24313877-24314093
          Length = 424

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +3

Query: 111 QTWACRTSLFNCKTSPNLTHGTLPC 185
           + W  R+S  +C  +P   +G LPC
Sbjct: 69  EEWEGRSSSVDCPVTPRKMYGNLPC 93


>03_05_0751 - 27389910-27392105
          Length = 731

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 14  GLKDKKYPDRRAMGFPFDRPSXSATS 91
           G K    PDR+ + +P D PS S+TS
Sbjct: 118 GHKFPPSPDRQLVAWPLDSPSESSTS 143


>09_02_0057 -
           3697255-3698116,3698191-3698351,3698442-3698636,
           3698728-3699126,3699208-3699477,3700102-3700695
          Length = 826

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +2

Query: 59  PFDRPSXSATSLQDFILPNMGLQDITIQLQNVTEPNPRNPP 181
           P+D     +T+  DF +  + ++ ITI +++   P P  PP
Sbjct: 539 PWDAKILPSTTYDDFSMEKVNMEKITIYVEH---PEPLEPP 576


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,463,613
Number of Sequences: 37544
Number of extensions: 174416
Number of successful extensions: 316
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 316
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 742607976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)