Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30007
         (533 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0036 + 3217163-3217584,3217752-3218322                           30   1.0  
11_06_0294 + 22022630-22024006,22024109-22024234,22024319-220244...    30   1.3  
11_06_0278 - 21854859-21855101,21855529-21855587,21855684-218557...    30   1.3  
04_04_1586 - 34621945-34623366                                         28   4.1  
06_01_0092 - 775290-775691                                             28   5.4  
04_04_1183 - 31537196-31537290,31537665-31537986,31538176-315382...    28   5.4  
04_01_0312 + 4206400-4206627,4206661-4207269,4207425-4207902,420...    27   7.2  
11_04_0045 + 12731603-12732487,12732572-12732647,12744290-12745371     27   9.5  

>09_02_0036 + 3217163-3217584,3217752-3218322
          Length = 330

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +3

Query: 57  ITIHWPSFYNVV-TGKTLALPNLIALQH 137
           I+  W  F N+V +G TL++PN + LQH
Sbjct: 69  ISAGWSRFINLVQSGPTLSIPNYVLLQH 96


>11_06_0294 +
           22022630-22024006,22024109-22024234,22024319-22024423,
           22024525-22024659,22024798-22024847,22026487-22026545,
           22026819-22026928,22027941-22028174,22028278-22028377,
           22028699-22028829,22029834-22029914,22029970-22030128
          Length = 888

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +2

Query: 119 LNRLAAHPPFASWRNSEEARTDRPSQQLRSLNGEWQIVSVNILLK 253
           L+R +   PF SW N  +A  D+ +  L  LNG    +   + LK
Sbjct: 399 LSRPSRQDPFTSWDNMRQACLDKGTHALGKLNGRAAALIEKVNLK 443


>11_06_0278 -
           21854859-21855101,21855529-21855587,21855684-21855711,
           21855812-21856702,21856792-21857011,21857638-21857687,
           21863174-21863284,21863379-21863483,21863568-21863693,
           21863796-21865187
          Length = 1074

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +2

Query: 119 LNRLAAHPPFASWRNSEEARTDRPSQQLRSLNGEWQIVSVNILLK 253
           L+R +   PF SW N  +A  D+ +  L  LNG    +   + LK
Sbjct: 404 LSRPSRQDPFTSWDNMRQACLDKGTHALGKLNGRAAALIEKVNLK 448


>04_04_1586 - 34621945-34623366
          Length = 473

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +1

Query: 427 YQGDGPLREPSP*SSFLGSRCRKALNRTLKG 519
           Y    PL +P+  SSF G  C  A+ RTL G
Sbjct: 165 YAQTDPLFDPAASSSFSGVSCGSAICRTLSG 195


>06_01_0092 - 775290-775691
          Length = 133

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 12/18 (66%), Positives = 15/18 (83%)
 Frame = -3

Query: 177 RASSLLRQLAKGGCAARR 124
           RA+SLLRQL + GCAA +
Sbjct: 22  RAASLLRQLIEDGCAAAK 39


>04_04_1183 - 31537196-31537290,31537665-31537986,31538176-31538277,
            31538826-31539071,31539385-31539506,31539588-31540344,
            31540447-31540770,31540872-31541052,31541208-31541602,
            31541877-31541942,31542225-31542377,31542593-31542691,
            31542776-31542982,31543432-31543572,31543852-31544019,
            31544302-31544395,31544479-31544585,31545140-31545274,
            31545549-31545656,31545975-31546049,31546197-31546262,
            31546500-31546556,31546678-31546702,31546809-31546889,
            31546966-31547080,31547211-31547370,31547444-31547483,
            31547599-31547780,31547905-31548234
          Length = 1650

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 18/62 (29%), Positives = 30/62 (48%)
 Frame = -2

Query: 355  HSTLSRSILLIYKGFCRFRPIG*KMS*FNKNLTRF*QNINAYNLPFAIQAAQLLGRAIGA 176
            H  + RSIL     F    P+G  ++ F+K+L    +N+  +   F  Q +QLL   +  
Sbjct: 1018 HDAMLRSILRAPMVFFHTNPLGRIINRFSKDLGDIDRNVAIFVNMFMAQISQLLSTFVLI 1077

Query: 175  GL 170
            G+
Sbjct: 1078 GI 1079


>04_01_0312 +
           4206400-4206627,4206661-4207269,4207425-4207902,
           4208006-4208297,4209278-4209569,4210013-4210465
          Length = 783

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = +3

Query: 69  WPSFYNVV-TGKTLALPNLIALQH 137
           W  F N+V +G TL+LP  + LQH
Sbjct: 133 WSRFTNLVQSGPTLSLPEYVLLQH 156


>11_04_0045 + 12731603-12732487,12732572-12732647,12744290-12745371
          Length = 680

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = +3

Query: 69  WPSFYNVV-TGKTLALPNLIALQH 137
           W  F N+V +G TL+LP  + LQH
Sbjct: 414 WSRFTNLVQSGLTLSLPEYVLLQH 437


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,588,800
Number of Sequences: 37544
Number of extensions: 327078
Number of successful extensions: 820
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 820
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)