Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30001
         (734 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0433 - 22891261-22891509,22892181-22892301,22892405-228924...    66   3e-11
04_04_0211 - 23636377-23636532,23636624-23636805,23637853-236379...    65   5e-11
02_02_0470 - 10700092-10700505                                         30   2.2  
01_07_0084 + 40976976-40977164,40978174-40978201,40978445-409785...    29   2.9  
10_08_0951 - 21769342-21769752                                         29   5.1  

>02_04_0433 -
           22891261-22891509,22892181-22892301,22892405-22892496,
           22892692-22892755,22892855-22892920,22893102-22893193,
           22893991-22894050,22894181-22894270,22894484-22894613,
           22895066-22895157,22895299-22895373,22895663-22895754,
           22896496-22896586,22897541-22897574,22897745-22897791,
           22899110-22899209,22899300-22899436,22900837-22901015,
           22901146-22901188,22901264-22901297,22901839-22901948,
           22902043-22902224,22903062-22903168,22903266-22903480
          Length = 833

 Score = 66.1 bits (154), Expect = 3e-11
 Identities = 37/76 (48%), Positives = 48/76 (63%), Gaps = 1/76 (1%)
 Frame = +3

Query: 279 FYPTQE-KIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLV 455
           FYP  + K RA S  +    +  ++R  +  GTV ILLAGR+ GKRVV +  L SGLLL+
Sbjct: 50  FYPADDVKPRAPSTRKA---NPTKLRSTITPGTVLILLAGRYMGKRVVFLKQLKSGLLLI 106

Query: 456 TGPFAFNSCPLRRIPQ 503
           TGPF  N  P+RR+ Q
Sbjct: 107 TGPFKINGVPIRRVNQ 122


>04_04_0211 -
           23636377-23636532,23636624-23636805,23637853-23637959,
           23637997-23638280
          Length = 242

 Score = 65.3 bits (152), Expect = 5e-11
 Identities = 37/75 (49%), Positives = 48/75 (64%), Gaps = 2/75 (2%)
 Frame = +3

Query: 285 PTQEKIRASSGGRPFS--KHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVT 458
           PT+ +  +SS    FS  + +  +R ++  GTV ILLAGR  GKRVV +  L SGLLLVT
Sbjct: 71  PTKLRSPSSSNLPEFSLFRFILLMRSSITPGTVLILLAGRFMGKRVVFLKQLKSGLLLVT 130

Query: 459 GPFAFNSCPLRRIPQ 503
           GPF  N  P+RR+ Q
Sbjct: 131 GPFKINGVPIRRVNQ 145


>02_02_0470 - 10700092-10700505
          Length = 137

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +3

Query: 360 LKIGTVCILLAGRHAGKRVVLVGILPSG 443
           LK G   ILL GR+AG++ V+V +   G
Sbjct: 5   LKPGKAVILLQGRYAGRKAVIVRVFEEG 32


>01_07_0084 + 40976976-40977164,40978174-40978201,40978445-40978575,
            40978941-40979434,40979516-40979609,40979686-40979779,
            40980342-40980444,40980550-40980601,40980716-40980756,
            40980881-40980960,40981490-40981936,40982378-40982554,
            40983205-40983803,40983886-40985040
          Length = 1227

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = +3

Query: 522  PPEFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFPSEQ 677
            PP   S   +  N    + S+   SAS + +  +  MTSLPQ   +  PS Q
Sbjct: 871  PPVASSVQQSFSNVVSSLPSQPYASASALPAQTRTNMTSLPQSMISVNPSTQ 922


>10_08_0951 - 21769342-21769752
          Length = 136

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +3

Query: 360 LKIGTVCILLAGRHAGKRVVLVGILPSG 443
           LK G   ILL GR AG++ V+V +   G
Sbjct: 5   LKPGKAVILLQGRFAGRKAVIVRVFEEG 32


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,663,081
Number of Sequences: 37544
Number of extensions: 410225
Number of successful extensions: 946
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 922
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 946
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)