Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00014
         (781 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1344 - 25912639-25914060                                         29   5.5  
08_02_0704 + 20197529-20197601,20197720-20198062,20198194-201982...    28   7.2  

>07_03_1344 - 25912639-25914060
          Length = 473

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = -3

Query: 284 AGEPPLPATDPAWHRFHHLRMRLSVT 207
           A  P LPAT P   R H   +RL+VT
Sbjct: 5   AARPVLPATPPKLRRHHAAALRLTVT 30


>08_02_0704 +
           20197529-20197601,20197720-20198062,20198194-20198262,
           20199341-20199479,20199727-20199786
          Length = 227

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -1

Query: 583 HF*LESLEALSG-CVCHS*ANHLSLSNDGP 497
           HF ++S   + G CV HS  N+  L N GP
Sbjct: 87  HFDMQSANTIEGKCVVHSFKNYTKLDNVGP 116


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,751,031
Number of Sequences: 37544
Number of extensions: 192998
Number of successful extensions: 595
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 595
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)