Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00013
         (590 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0837 + 32110008-32110079,32110200-32110448                       31   0.52 
01_05_0490 + 22672241-22674679                                         31   0.69 
12_01_0966 + 9732781-9733140                                           29   2.8  
12_01_0965 + 9688062-9688532                                           29   2.8  
11_01_0662 - 5389746-5390548,5390727-5391368,5391624-5391659,539...    28   4.8  
07_01_0674 + 5047503-5047646,5047808-5047901,5048743-5048828,504...    28   6.4  
12_01_0686 - 5855216-5858263                                           27   8.5  
11_08_0007 + 27551173-27551828,27552071-27552282,27553371-275535...    27   8.5  
04_04_1696 + 35448667-35449641,35449726-35450562,35450667-354510...    27   8.5  

>02_05_0837 + 32110008-32110079,32110200-32110448
          Length = 106

 Score = 31.5 bits (68), Expect = 0.52
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = -2

Query: 271 EWRMRTLLLEGGVPGIADDEGAEDCSNTSSGTSYSHCRCTSTNEFGS 131
           +W++R +  +GG+  + +   + D    SSG   S   C  T  FGS
Sbjct: 31  QWQLRGVCNDGGLSTVVEATSSGDGKLISSGAFMSTTNCNGTTYFGS 77


>01_05_0490 + 22672241-22674679
          Length = 812

 Score = 31.1 bits (67), Expect = 0.69
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = +3

Query: 99  RPYRSLRTLTLLPNSLVLVQRQWE*LVPELVLEQSSAPSSSAMPGTPP 242
           +P + + T+T  P  L    R+W   + E+VLEQ S    + MP  PP
Sbjct: 296 QPQQPVETVTPTPPPLAR-SRRWNPEMLEVVLEQESRVEETTMPPPPP 342


>12_01_0966 + 9732781-9733140
          Length = 119

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = +2

Query: 242 LKQQCSH--TPFWVSPCLRLWVCSVL*WRSCCSSL 340
           ++QQCS   TPF+ SP  +L  C V+  + CC  L
Sbjct: 14  VRQQCSTVATPFFQSPVFQLRNCQVM-QQQCCQQL 47


>12_01_0965 + 9688062-9688532
          Length = 156

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = +2

Query: 242 LKQQCSH--TPFWVSPCLRLWVCSVL*WRSCCSSL 340
           ++QQCS   TPF+ SP  +L  C V+  + CC  L
Sbjct: 51  VRQQCSTVATPFFQSPVFQLRNCQVM-QQQCCQQL 84


>11_01_0662 -
           5389746-5390548,5390727-5391368,5391624-5391659,
           5392314-5392377
          Length = 514

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -3

Query: 351 NSLESEEQQERHHKTEQTHSLRQ 283
           NS+   E QE+ H  E+TH LRQ
Sbjct: 62  NSIFYSESQEQKHVKEETHRLRQ 84


>07_01_0674 +
           5047503-5047646,5047808-5047901,5048743-5048828,
           5049380-5049429,5049517-5049586,5049668-5049749,
           5049867-5050267,5050414-5050941,5051823-5052044
          Length = 558

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +3

Query: 180 PELVLEQSSAPSSSAMPGTPPSSSSVL 260
           P + L  SSA +SS+MPGT  +  S L
Sbjct: 177 PRIPLPSSSAGASSSMPGTEEAGPSTL 203


>12_01_0686 - 5855216-5858263
          Length = 1015

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +3

Query: 15  WCDHLQQYPPIHRWYLLSLHSSLQCGP-SRPYRSLRTLTLL 134
           WCDH+ +Y P  +  +LSL      GP    + ++R+LT +
Sbjct: 233 WCDHIAKYTP--KLQVLSLPYCSLSGPVCASFAAMRSLTTI 271


>11_08_0007 +
           27551173-27551828,27552071-27552282,27553371-27553550,
           27555154-27556187
          Length = 693

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 5/63 (7%)
 Frame = -2

Query: 199 CSNTSSGTSYSHCRCT---STNEF--GSRVNVLSDRYGLEGPHCRELCRDSRYHLCMGGY 35
           C N ++G  Y  C C+   S N +  G  +N+       EGP        SR +   GGY
Sbjct: 261 CVNATNGKGYL-CNCSAGYSGNPYVTGGCININECELRREGPAMYPCYSGSRCYDTEGGY 319

Query: 34  CCK 26
            CK
Sbjct: 320 KCK 322


>04_04_1696 +
           35448667-35449641,35449726-35450562,35450667-35451001,
           35451371-35451497,35451594-35451752,35451872-35453053,
           35453164-35453424,35453513-35453761
          Length = 1374

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -3

Query: 516 NKFIPVDAHCRCNXHQSLHHYEGEVSKHSIPWLSTPDS 403
           N+ +P D    C    SL  Y     K ++P+ + PDS
Sbjct: 387 NRSLPTDYDVTCTSRGSLLEYHDGDHKATVPFTNKPDS 424


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,079,477
Number of Sequences: 37544
Number of extensions: 332972
Number of successful extensions: 1337
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1284
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1335
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)