Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00011
         (439 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1215 + 9815918-9816218,9816772-9816912,9816988-9817106,981...    29   1.2  
09_02_0338 + 7426999-7428322,7428390-7428646                           28   3.8  
05_03_0618 - 16262826-16263097,16263111-16263183                       27   5.0  
12_01_0357 + 2720860-2721066,2721169-2721384,2721481-2723608,272...    27   6.6  
09_04_0269 + 16265191-16265472,16265574-16266149                       27   6.6  
05_01_0046 + 320600-320631,320694-320733,320871-320957,321282-32...    27   8.7  
03_05_0636 - 26307847-26307852,26308331-26308726,26308802-26309461     27   8.7  
01_07_0242 + 42234217-42234320,42234708-42235029,42235377-422357...    27   8.7  

>01_01_1215 +
           9815918-9816218,9816772-9816912,9816988-9817106,
           9817922-9818191,9818330-9818369,9818519-9818616,
           9818745-9818825
          Length = 349

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
 Frame = +1

Query: 175 SRARFQLSGNSGRKHSRCCTS-ILRKFRAGSIVSQLTAAAMVAPTP*GD 318
           S++   LS  +GRK  R C+  ++R   + SI + LT+AA+V P P GD
Sbjct: 137 SQSIVSLSSFAGRKRIRVCSGFVIRWNDSTSIGTILTSAALVRP-PCGD 184


>09_02_0338 + 7426999-7428322,7428390-7428646
          Length = 526

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 17/47 (36%), Positives = 20/47 (42%)
 Frame = -3

Query: 170 LMESTDPQCHILQHRRPRLPLMQLEAPCSFNFCSLRAIRRYKSYYVD 30
           LM      C  L HR P L +  L A        L+AI   KSYY +
Sbjct: 397 LMVQHTRNCVTLPHRNPMLVVALLAATLGLVCLLLQAIYTMKSYYCE 443


>05_03_0618 - 16262826-16263097,16263111-16263183
          Length = 114

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 55  RIARREQKLKEHGASSCISGKRGRRC 132
           R+ARR + LK   +  C  G R RRC
Sbjct: 11  RMARRRRWLKRRRSGHCRCGLRSRRC 36


>12_01_0357 +
           2720860-2721066,2721169-2721384,2721481-2723608,
           2723699-2724124,2724242-2724546,2724660-2724823,
           2724899-2724980
          Length = 1175

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +1

Query: 172 GSRARFQLSGNSGRKHSRCCTS 237
           GSRA F+   NS +KHS+ C +
Sbjct: 865 GSRALFEGGFNSSQKHSKSCAA 886


>09_04_0269 + 16265191-16265472,16265574-16266149
          Length = 285

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -3

Query: 167 MESTDPQCHILQHRRPRLPL 108
           M  T P C +L++ RPRLPL
Sbjct: 157 MARTGPLCLLLENPRPRLPL 176


>05_01_0046 +
           320600-320631,320694-320733,320871-320957,321282-321378,
           321532-321823,321850-321990,322285-322390
          Length = 264

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 16/55 (29%), Positives = 22/55 (40%)
 Frame = +1

Query: 61  ARREQKLKEHGASSCISGKRGRRCCNIWHWGSVDSISGSRARFQLSGNSGRKHSR 225
           A++ +   E   S    G  G +    W+W   D  SGS + FQ    S    SR
Sbjct: 87  AQKWKNFDEDDCSDTPYGNFGGKRSFTWYWPGEDDESGSPSGFQWRDESQSNKSR 141


>03_05_0636 - 26307847-26307852,26308331-26308726,26308802-26309461
          Length = 353

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = +1

Query: 61  ARREQKLKEHG-ASSCISGKRGRRCCNIWHWGSVDSISG 174
           A RE  + ++G A    +   G R  N W  G  DS+SG
Sbjct: 44  ALRESSVSQNGMAPPEPTAHEGHRASNSWSSGDTDSVSG 82


>01_07_0242 +
           42234217-42234320,42234708-42235029,42235377-42235778,
           42235921-42236265,42236785-42236854,42237098-42237173,
           42237309-42237459
          Length = 489

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -1

Query: 376 QIKQKRSDPVAMSRTGDV*HHLMAWGLPWQQQSTVTQCCRP 254
           ++ QK+S+ V + R G     ++   L W++  TV   C+P
Sbjct: 182 KVSQKKSNYVPVGRRGVFGGVILNMHLHWKKHETVKVICKP 222


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,236,900
Number of Sequences: 37544
Number of extensions: 217257
Number of successful extensions: 470
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 470
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 823860276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)