Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00003
         (711 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0110 - 866728-866952,867035-867193,867315-867448,868225-86...    98   7e-21
03_05_0108 - 20887146-20887370,20887460-20887618,20887930-208880...    97   9e-21
02_05_0315 - 27822379-27823899                                         29   2.8  
01_01_1166 + 9287840-9288040,9289752-9289799,9292166-9292282,929...    28   6.4  
10_08_0694 - 19929918-19930292,19930633-19930866                       28   8.4  

>06_01_0110 -
           866728-866952,867035-867193,867315-867448,868225-868333
          Length = 208

 Score = 97.9 bits (233), Expect = 7e-21
 Identities = 68/202 (33%), Positives = 91/202 (45%), Gaps = 3/202 (1%)
 Frame = +2

Query: 14  MGKGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRC 193
           M K NN+IPNGHF K WQ +VKTWFNQPAR+ RR+  R               LRPIV+C
Sbjct: 1   MVKHNNVIPNGHFKKHWQNYVKTWFNQPARKQRRRIARQKKAVKIFPRPTSGPLRPIVQC 60

Query: 194 PTVRYHTKVRAGRGFTLREIRPQ-IEPSICPNDWNCCRSP*TQQVC*IIANQCSKNKGIQ 370
            T++Y+ K RAGRGFTL E++   I     P            +    +     + K  +
Sbjct: 61  QTLKYNMKSRAGRGFTLEELKAAGIPKKFAPTIGISVDHRRKNRSLEGLQANVQRLKTYK 120

Query: 371 SASYTVPERQKGAEG*GQ*RRT*AGYTATWSINASSTACS*ISCKTI--TEDEKNFKAYQ 544
           +     P R +  +         A  T         T     S + +  T+D K FKAY 
Sbjct: 121 AKLVIFPRRARKVKAGDSTPEELATATQVQGDYMPITRGEKRSVEVVKVTDDMKAFKAYA 180

Query: 545 YLRGARSIAKLVGIRAKRLKDA 610
            LR  R   + +G R KR  +A
Sbjct: 181 KLRVERMNQRHIGARQKRAAEA 202



 Score = 81.0 bits (191), Expect = 9e-16
 Identities = 38/76 (50%), Positives = 56/76 (73%), Gaps = 1/76 (1%)
 Frame = +3

Query: 276 FARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFP-KGKKVLKGEANEEERKLATQ 452
           FA TIGI+VD RR+N+S+E LQ NVQR+K Y+A+L++FP + +KV  G++  EE   ATQ
Sbjct: 89  FAPTIGISVDHRRKNRSLEGLQANVQRLKTYKAKLVIFPRRARKVKAGDSTPEELATATQ 148

Query: 453 LRGPLMPVQQPAPKSV 500
           ++G  MP+ +   +SV
Sbjct: 149 VQGDYMPITRGEKRSV 164


>03_05_0108 -
           20887146-20887370,20887460-20887618,20887930-20888063,
           20888597-20888705
          Length = 208

 Score = 97.5 bits (232), Expect = 9e-21
 Identities = 44/81 (54%), Positives = 54/81 (66%)
 Frame = +2

Query: 14  MGKGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRC 193
           M K NN+IPNGHF K WQ +VKTWFNQPAR+ RR+  R               LRPIV+C
Sbjct: 1   MVKHNNVIPNGHFKKHWQNYVKTWFNQPARKQRRRIARQKKAVKIFPRPTSGPLRPIVQC 60

Query: 194 PTVRYHTKVRAGRGFTLREIR 256
            T++Y+ K RAGRGFTL E++
Sbjct: 61  QTLKYNMKSRAGRGFTLEELK 81



 Score = 79.8 bits (188), Expect = 2e-15
 Identities = 37/76 (48%), Positives = 56/76 (73%), Gaps = 1/76 (1%)
 Frame = +3

Query: 276 FARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFP-KGKKVLKGEANEEERKLATQ 452
           +A TIGI+VD RR+N+S+E LQ NVQR+K Y+A+L++FP + +KV  G++  EE   ATQ
Sbjct: 89  YAPTIGISVDHRRKNRSLEGLQANVQRLKTYKAKLVIFPRRARKVKAGDSTAEELATATQ 148

Query: 453 LRGPLMPVQQPAPKSV 500
           ++G  MP+ +   +SV
Sbjct: 149 VQGDYMPIARGEKRSV 164


>02_05_0315 - 27822379-27823899
          Length = 506

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
 Frame = -1

Query: 288 SFGQILGSICGLISRRVNPLPART-LVWYRTVGHRTIGRN-GPAAGRGATALAFFIL 124
           S+G ++ +  G+IS R   LPART L WY+   ++    N  P A R     +F+ L
Sbjct: 365 SWGFVVMASRGMISAREMELPARTFLNWYKRADYKAHAFNTRPLARRPCEKPSFYYL 421


>01_01_1166 +
           9287840-9288040,9289752-9289799,9292166-9292282,
           9293018-9293700,9295214-9297190,9298330-9298441,
           9299848-9299904
          Length = 1064

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +3

Query: 327 VESLQINVQRIKEYRARLILFPKGKKVLKGEANEEERKLATQL 455
           ++SL+  VQR+ E R R +L P G        ++E R  A  +
Sbjct: 182 IQSLRTRVQRVSERRLRYMLNPTGSLSSSNYIDQERRLSALNI 224


>10_08_0694 - 19929918-19930292,19930633-19930866
          Length = 202

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 14/57 (24%), Positives = 28/57 (49%)
 Frame = +3

Query: 312 RRNKSVESLQINVQRIKEYRARLILFPKGKKVLKGEANEEERKLATQLRGPLMPVQQ 482
           R N   + + + +   K     LI+ P G +VL+G   E++ K A ++   L  +++
Sbjct: 54  RSNPVHKKIPVLLHHGKPIAESLIIIPPGIRVLRGSVEEDKDKAAGEMSTALQHLEE 110


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,380,333
Number of Sequences: 37544
Number of extensions: 353067
Number of successful extensions: 900
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 878
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 896
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)