Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10a16f
         (656 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0204 - 19022329-19023990                                         30   1.9  
06_03_0613 + 22748223-22749513,22750046-22750179,22751066-227513...    29   2.5  
04_04_0577 + 26349205-26349669,26350384-26350482,26350887-263510...    29   2.5  
01_05_0647 + 23910318-23910694,23911732-23911867,23912067-239122...    28   5.7  
10_08_0786 - 20540061-20542106                                         28   7.5  
05_06_0067 - 25314741-25315410,25315498-25315892                       28   7.5  
05_01_0534 - 4601844-4602297,4602689-4602847,4602947-4603514,460...    28   7.5  

>05_04_0204 - 19022329-19023990
          Length = 553

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 303 IEKSCDKYMNVDVVKQFMEMYKMGMLPRGETF 398
           + K CD++  + VVK F +M K G+ P   TF
Sbjct: 355 MRKLCDEHRWLSVVKLFTDMAKKGIAPNSWTF 386


>06_03_0613 +
           22748223-22749513,22750046-22750179,22751066-22751309,
           22751401-22751609,22751691-22751740,22751933-22752053,
           22752138-22752383
          Length = 764

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 16/56 (28%), Positives = 31/56 (55%)
 Frame = -2

Query: 448 TRKTLTASSIWSSLVWTKVSPRGSMPILYISMNCLTTSTFMYLSQLFSMLYSLAIS 281
           +R TL +  +W  L   K+    ++ +L ++ NCL  +   + S+++S L SL +S
Sbjct: 118 SRLTLASLGVWGELPGAKLHRLQALRVLNLTGNCLYGAVPEHFSRMYS-LQSLVLS 172


>04_04_0577 +
           26349205-26349669,26350384-26350482,26350887-26351064,
           26351900-26352087,26352335-26352373
          Length = 322

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 19/70 (27%), Positives = 35/70 (50%)
 Frame = +3

Query: 207 QGDRQGV*HGRLEDMVKQTMFEDIKEIAKEYNIEKSCDKYMNVDVVKQFMEMYKMGMLPR 386
           Q  R+ V    L++++++T F D+ ++ ++Y      +K  N DVV   + + K  ML  
Sbjct: 171 QKGREAVDFPALQELMEKTGF-DMDDVVRKYIRYTLNEKPFNPDVVVDLIHLRKASMLED 229

Query: 387 GETFVHTNEL 416
            E     NE+
Sbjct: 230 AEVAEILNEI 239


>01_05_0647 +
           23910318-23910694,23911732-23911867,23912067-23912277,
           23912357-23912724,23913793-23914081,23914173-23914372,
           23914452-23914646
          Length = 591

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 20/56 (35%), Positives = 28/56 (50%)
 Frame = +1

Query: 82  SGGYGTMVFTKEPMVNLDMKMKELCIMKLLDHILQPTMFEDIKEIAKEYNMVGWRI 249
           +GGY  + FT+E M N     + L   K+LD         +IKEI K+Y +  W I
Sbjct: 340 AGGYENLGFTREDMKNRLYSKRSL---KILD-------VNNIKEIPKQYILQRWTI 385


>10_08_0786 - 20540061-20542106
          Length = 681

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = +3

Query: 339 VVKQFMEMYKMGMLPRGETFVHTNELQMEEAVKVFRVLYYAK 464
           V K  +EM KMG +PR E   H     +EE VK  ++ Y+++
Sbjct: 578 VAKLDLEMRKMGYIPRTEFVYH----DLEEEVKEQQLSYHSE 615


>05_06_0067 - 25314741-25315410,25315498-25315892
          Length = 354

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -3

Query: 264 WSA*PYPPADHVILLGDLLDVLKHGRLEDM 175
           W   P  PA  ++++GD L V+ +GR+  +
Sbjct: 239 WVTVPPDPASFLVIVGDSLQVMTNGRMRSV 268


>05_01_0534 -
           4601844-4602297,4602689-4602847,4602947-4603514,
           4604853-4605246
          Length = 524

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -3

Query: 273 PQTWSA*PYPPADHVILLGDLLDVLKHGRLEDM 175
           P  W   P  P   ++++GDL  VL +GR   +
Sbjct: 414 PDRWVTVPGTPGALIVVVGDLFHVLTNGRFHSV 446


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,308,266
Number of Sequences: 37544
Number of extensions: 364347
Number of successful extensions: 1070
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1048
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1069
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)