Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10a13r
         (749 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0399 - 2905026-2905406,2905522-2905630,2905809-2907475,290...    30   1.7  
09_04_0463 - 17803120-17803233,17803647-17803758,17803866-178039...    29   3.9  
08_02_0572 - 18842539-18842950,18843242-18843613,18844947-18845671     29   3.9  
11_01_0036 + 268028-268168,268734-268839,268920-269031,269126-26...    28   6.9  
11_05_0091 - 18982390-18982948,18983088-18983173                       28   9.1  
07_01_0307 - 2194796-2199274                                           28   9.1  

>02_01_0399 - 2905026-2905406,2905522-2905630,2905809-2907475,
            2907650-2907790,2907870-2908043,2908577-2908851,
            2909592-2909755,2910409-2910536,2910628-2910734,
            2911747-2911880,2912266-2912441,2912530-2914257,
            2915084-2915239,2915328-2915486,2915581-2915751,
            2915931-2916047,2916417-2916473,2916565-2916680,
            2916790-2916916,2917862-2917945
          Length = 2056

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = -2

Query: 223  HLDLIRFVTESEILICQCCDEQLNRFSCKEGHL-NMFCSLTFT 98
            HL+ I   TE    I Q C E   ++  K+GHL N+F ++TF+
Sbjct: 1046 HLERINISTED---ILQKCQEVSGKYGKKKGHLSNLFKNITFS 1085


>09_04_0463 -
           17803120-17803233,17803647-17803758,17803866-17803927,
           17804171-17804269,17804370-17804474,17804560-17804639,
           17806445-17806517,17806611-17806700,17807215-17807277,
           17808104-17808155,17808504-17808604,17809139-17809238,
           17809683-17809746,17810127-17810184,17810549-17810635,
           17810736-17810870,17810950-17811054,17811247-17811351,
           17811427-17811663,17812287-17812380,17812863-17813020,
           17813289-17813363,17813448-17813512,17814206-17814260
          Length = 762

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
 Frame = -2

Query: 673 FMTTENTMDNVFSVLLD-NPTKSLLNYRDCLNLLRYRTMKLKELPSADYDKLYQDGHTDV 497
           +MT+   +DN    +LD N    LLN+  C N L      +KEL         ++ H D 
Sbjct: 362 YMTSFRGIDNKVYYMLDLNKNAELLNFSGCGNTLNCNHPVVKELILDSLRHWVEEYHIDG 421

Query: 496 YKMKL 482
           ++  L
Sbjct: 422 FRFDL 426


>08_02_0572 - 18842539-18842950,18843242-18843613,18844947-18845671
          Length = 502

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 11/20 (55%), Positives = 17/20 (85%)
 Frame = -2

Query: 376 LLNHATKTINNLYEILNENG 317
           L++H+ +T+ NLYEIL E+G
Sbjct: 206 LMSHSHETLTNLYEILMEDG 225


>11_01_0036 +
           268028-268168,268734-268839,268920-269031,269126-269241,
           269321-269399,269476-269614,269689-269747,269924-270218,
           270303-270362,270502-270933
          Length = 512

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = -2

Query: 715 QIWYRKLRNRIETCFMTTENTM-DNVFSVLLDNPTKSLLNYRDCLN 581
           Q WYR LR +I     +T  T+ D+V   +L+ P  SLLN  D  N
Sbjct: 249 QWWYR-LRLQISDHTTSTSCTIFDDVAQSMLETPVSSLLNLLDGKN 293


>11_05_0091 - 18982390-18982948,18983088-18983173
          Length = 214

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +1

Query: 568 YTSANLSNPDNSVSSLLGCPGELKTR 645
           + S NL  PD   +S  GCPG  + R
Sbjct: 7   WASQNLKQPDKGTTSHNGCPGSSRMR 32


>07_01_0307 - 2194796-2199274
          Length = 1492

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 10/37 (27%), Positives = 23/37 (62%)
 Frame = -2

Query: 298 ECFNGCKMFIEDYCERNERKVQSVLHLDLIRFVTESE 188
           +CF+ C +F EDY   N+  ++  + LD++   ++++
Sbjct: 511 QCFSYCALFPEDYKFNNKELIRFWIGLDILHSESQNK 547


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,878,342
Number of Sequences: 37544
Number of extensions: 334946
Number of successful extensions: 818
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 818
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)