Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10a08r
         (722 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0941 - 9301603-9301788,9301866-9301958,9302060-9302120,930...    28   6.5  

>08_01_0941 -
           9301603-9301788,9301866-9301958,9302060-9302120,
           9302397-9302648,9302903-9303720,9303993-9304490
          Length = 635

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 10/41 (24%), Positives = 19/41 (46%)
 Frame = -1

Query: 395 SINVKKQSSNFGSVECSLSLRTPGLIKFYENLCQFLFNIYC 273
           ++  K  + +   +EC  S    G+     +LC F+ + YC
Sbjct: 565 NVRYKTNAEDLPRLECRTSFDDTGITNIQRDLCHFIHHKYC 605


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,008,105
Number of Sequences: 37544
Number of extensions: 282823
Number of successful extensions: 473
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 473
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)