Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10a07r
         (783 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0353 + 2545995-2546208,2546362-2546492,2546846-2546929,254...    29   3.2  
11_01_0800 - 7047425-7048253,7048340-7048927,7049050-7049268,704...    29   5.5  
10_07_0057 + 12460986-12461036,12461108-12461161,12461420-124614...    29   5.5  
07_03_0906 + 22481456-22481802,22482105-22482186,22482299-224824...    28   7.3  
06_01_1082 - 8847795-8848033,8848511-8848724                           28   9.6  

>06_01_0353 +
           2545995-2546208,2546362-2546492,2546846-2546929,
           2546972-2547316,2547327-2547582,2547683-2547879
          Length = 408

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 15/55 (27%), Positives = 25/55 (45%)
 Frame = -2

Query: 728 YQDLEDKLYNSILTGDYDSAVRKSLEYESQGQGSIVQNVVNNLIIDKRRNTMEYC 564
           Y++ + KL   I   +  + +  +L   S G G  +QN  +N  +  R N   YC
Sbjct: 155 YKEYQSKLAALIGQKNATAILSDALYIVSTGTGDFIQNYYHNASLSSRYNVNSYC 209


>11_01_0800 -
           7047425-7048253,7048340-7048927,7049050-7049268,
           7049398-7049518,7050593-7050983
          Length = 715

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 19/69 (27%), Positives = 27/69 (39%), Gaps = 3/69 (4%)
 Frame = -3

Query: 709 NCTTASSPVTTTVLYVRAWNTRAKARAASFKM*LTI*SLTRDGTPWSTATSCGSATD--- 539
           +C TAS      +L+        K R    +    I  + R    W+   SCG+  D   
Sbjct: 579 DCATASDTTQIKLLFGAKGAVHIKGRCIGGERRFAIYRMERGVDKWTVKCSCGATDDDGE 638

Query: 538 RILSKSTSH 512
           R+LS  T H
Sbjct: 639 RMLSCDTCH 647


>10_07_0057 +
           12460986-12461036,12461108-12461161,12461420-12461482,
           12461666-12461716,12461996-12462057,12462156-12462318,
           12462829-12462939,12463029-12463166,12463248-12463322,
           12463420-12463540,12464827-12464981,12465080-12465154,
           12465270-12465473,12465670-12465786
          Length = 479

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = +1

Query: 493 MMSLKLNGKYFLTISCPLPTHSL*QYSMVFRLLSMI 600
           MM L + GK    I CP+P+HSL   SMV R  +++
Sbjct: 152 MMHLLIRGKKD-GILCPIPSHSLYTDSMVLRGATLV 186


>07_03_0906 +
           22481456-22481802,22482105-22482186,22482299-22482400,
           22483005-22483315,22483948-22484044,22484522-22484696,
           22485074-22485150,22485632-22486027,22486254-22486303,
           22487315-22487382,22488142-22488701
          Length = 754

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 15/36 (41%), Positives = 16/36 (44%), Gaps = 3/36 (8%)
 Frame = +2

Query: 635 GLGSRIPSSYVQHCRSHR*GCCCTVC---PRGLGKK 733
           G G  +PS        HR GC C VC   P G G K
Sbjct: 599 GEGESLPSQPTTRHPRHRPGCSCIVCIQPPSGKGPK 634


>06_01_1082 - 8847795-8848033,8848511-8848724
          Length = 150

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = -2

Query: 257 ARDRVVYGGNSADSTR--EQWFFQPAKYENDVLFFIYNREFND 135
           A  +  Y G++A   R  + W      Y  DVL F YN+E++D
Sbjct: 39  AGGKTYYVGDAAGWGRNLDWWLAGKTFYAGDVLVFKYNKEYHD 81


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,640,276
Number of Sequences: 37544
Number of extensions: 433483
Number of successful extensions: 1263
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1262
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)