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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10a03r
         (756 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0376 - 16475216-16475608                                         35   0.061
06_01_0125 + 970746-970967,971126-971226,971897-972026,972108-97...    32   0.43 
06_01_0145 + 1092764-1093351                                           31   1.3  
08_02_0595 + 19097299-19097462,19097490-19097910                       30   1.7  
02_02_0212 - 7915358-7915431,7915515-7916127                           29   3.0  
10_02_0147 - 5855100-5855105,5855176-5855808                           29   4.0  
04_03_0081 - 10829429-10829758                                         29   4.0  
05_04_0053 + 17520202-17520984                                         29   5.3  
12_02_0970 + 24939345-24939416,24940689-24941054                       28   7.0  
12_01_0704 + 6061461-6061873,6062149-6062891,6062994-6063451           28   7.0  
11_01_0584 - 4640982-4641439,4641541-4642273                           28   7.0  
10_03_0047 - 7358656-7359113,7359216-7359948                           28   7.0  
09_04_0293 - 16442989-16443446,16443548-16444280                       28   7.0  
07_03_0731 - 21031002-21031459,21031562-21032304,21032580-21032992     28   7.0  
03_05_0129 - 21102892-21103349,21103452-21104184                       28   7.0  
03_04_0121 - 17429529-17430639,17430721-17430866                       28   7.0  
10_01_0044 - 583349-584044                                             28   9.2  
05_01_0372 - 2913518-2916562,2916674-2917528                           28   9.2  
04_04_1149 + 31273203-31273695,31274016-31275165,31275617-31277078     28   9.2  
01_06_1699 - 39269477-39269574,39269690-39269929,39270029-392700...    28   9.2  

>08_02_0376 - 16475216-16475608
          Length = 130

 Score = 35.1 bits (77), Expect = 0.061
 Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
 Frame = -1

Query: 747 PLNHCSQYTGSSWTGGGARRE-RGSRVTGSSRAGWA*RNSRYTRACWPARGSRSQHRLST 571
           P N C ++    W G G + E R ++   ++ A W  R S    + WPA   R+  +L  
Sbjct: 35  PFNRCMEWDEIRWNGDGIKSELRNAKEEETTVAPWRWRPS---SSRWPAMEMRATEKLRA 91

Query: 570 NTVDVGK*REEHLRKHRQRTTERAISKS 487
           ++    + R EH +      + R+++ S
Sbjct: 92  SSSVASRPRVEHAQSSAGSVSLRSLTVS 119


>06_01_0125 +
           970746-970967,971126-971226,971897-972026,972108-972333,
           972400-972502,972519-972594,972710-973333
          Length = 493

 Score = 32.3 bits (70), Expect = 0.43
 Identities = 16/36 (44%), Positives = 18/36 (50%)
 Frame = -2

Query: 353 GRPGPSGSNGAKGDKGDRGVEGVGLPGTEGPRGAPG 246
           G  GP G  G+ GD G  GV G+G  G  G  G  G
Sbjct: 19  GDGGPHGIGGSGGDGGCGGVGGLGRKGGRGGHGGRG 54



 Score = 29.9 bits (64), Expect = 2.3
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = -2

Query: 344 GPSGSNGAKGDKGDRGVEGVGLPGTEGPRGAPG 246
           GP G  G  G  GD G  G+G  G +G  G  G
Sbjct: 7   GPGGIGGEGGPGGDGGPHGIGGSGGDGGCGGVG 39


>06_01_0145 + 1092764-1093351
          Length = 195

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 15/36 (41%), Positives = 17/36 (47%)
 Frame = -2

Query: 353 GRPGPSGSNGAKGDKGDRGVEGVGLPGTEGPRGAPG 246
           G  GP G  G  G  GD G  G+G  G +G  G  G
Sbjct: 103 GNAGPGGVGGKGGPGGDGGPGGIGGRGGDGGCGGVG 138


>08_02_0595 + 19097299-19097462,19097490-19097910
          Length = 194

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 3/35 (8%)
 Frame = -2

Query: 359 DTGRPGPSGS-NGAKGDKGD--RGVEGVGLPGTEG 264
           D  +P   G+ +G +GD+GD  +GV+GVG  G +G
Sbjct: 94  DAAQPSNKGAADGFQGDQGDGSQGVQGVGSQGIQG 128


>02_02_0212 - 7915358-7915431,7915515-7916127
          Length = 228

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 4/37 (10%)
 Frame = -2

Query: 353 GRPGPSGSN--GAKGDKGD--RGVEGVGLPGTEGPRG 255
           G+P   G+    A+ ++GD  +GV GV + GT+GP+G
Sbjct: 103 GQPSDKGATDGSAQENQGDHSQGVHGVQVDGTQGPQG 139


>10_02_0147 - 5855100-5855105,5855176-5855808
          Length = 212

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 12/25 (48%), Positives = 20/25 (80%), Gaps = 2/25 (8%)
 Frame = -2

Query: 332 SNGAKGDK--GDRGVEGVGLPGTEG 264
           ++G++GD+  G +GV+GVG  GT+G
Sbjct: 113 ADGSRGDQDDGSQGVQGVGSQGTQG 137


>04_03_0081 - 10829429-10829758
          Length = 109

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = -2

Query: 335 GSNGAKGDKGDRGVEGVGLPGTEG 264
           GS G +GD G +GV+GVG  G +G
Sbjct: 62  GSQGVQGD-GSQGVQGVGSHGIQG 84


>05_04_0053 + 17520202-17520984
          Length = 260

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +2

Query: 302 YLLYRPLRHYFPMVPVSPYHLVLQGT 379
           YL+YRP R  F +  V+ Y L L GT
Sbjct: 75  YLVYRPSRPAFAVTSVAVYSLSLNGT 100


>12_02_0970 + 24939345-24939416,24940689-24941054
          Length = 145

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = -2

Query: 356 TGRPGPSGSNGAKGDKGDRGVEGVGLPGTEGPRG 255
           +GR G   +  A G  G+ GVEG G  G EG  G
Sbjct: 103 SGRSGSGSAEKASGG-GEEGVEGSGYGGGEGGGG 135


>12_01_0704 + 6061461-6061873,6062149-6062891,6062994-6063451
          Length = 537

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 15/40 (37%), Positives = 18/40 (45%)
 Frame = +2

Query: 332 FPMVPVSPYHLVLQGTHVDQARLIPLGHPEAQEDQVFLEG 451
           FP VP+  Y LV  G       L P  H     DQ+ +EG
Sbjct: 380 FPRVPLGRYLLVDSGFPTRMGFLAPYPHVRYHRDQLAVEG 419


>11_01_0584 - 4640982-4641439,4641541-4642273
          Length = 396

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 15/40 (37%), Positives = 18/40 (45%)
 Frame = +2

Query: 332 FPMVPVSPYHLVLQGTHVDQARLIPLGHPEAQEDQVFLEG 451
           FP VP+  Y LV  G       L P  H     DQ+ +EG
Sbjct: 239 FPRVPLGRYLLVDSGFPTRMGFLAPYPHVRYHRDQLAVEG 278


>10_03_0047 - 7358656-7359113,7359216-7359948
          Length = 396

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 15/40 (37%), Positives = 18/40 (45%)
 Frame = +2

Query: 332 FPMVPVSPYHLVLQGTHVDQARLIPLGHPEAQEDQVFLEG 451
           FP VP+  Y LV  G       L P  H     DQ+ +EG
Sbjct: 239 FPRVPLGRYLLVDSGFPTRMGFLAPYPHVRYHRDQLAVEG 278


>09_04_0293 - 16442989-16443446,16443548-16444280
          Length = 396

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 15/40 (37%), Positives = 18/40 (45%)
 Frame = +2

Query: 332 FPMVPVSPYHLVLQGTHVDQARLIPLGHPEAQEDQVFLEG 451
           FP VP+  Y LV  G       L P  H     DQ+ +EG
Sbjct: 239 FPRVPLGRYLLVDSGFPTRMGFLAPYPHVRYHRDQLAVEG 278


>07_03_0731 - 21031002-21031459,21031562-21032304,21032580-21032992
          Length = 537

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 15/40 (37%), Positives = 18/40 (45%)
 Frame = +2

Query: 332 FPMVPVSPYHLVLQGTHVDQARLIPLGHPEAQEDQVFLEG 451
           FP VP+  Y LV  G       L P  H     DQ+ +EG
Sbjct: 380 FPRVPLGRYLLVDSGFPTRMGFLAPYPHVRYHRDQLAVEG 419


>03_05_0129 - 21102892-21103349,21103452-21104184
          Length = 396

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 15/40 (37%), Positives = 18/40 (45%)
 Frame = +2

Query: 332 FPMVPVSPYHLVLQGTHVDQARLIPLGHPEAQEDQVFLEG 451
           FP VP+  Y LV  G       L P  H     DQ+ +EG
Sbjct: 239 FPRVPLGRYLLVDSGFPTRMGFLAPYPHVRYHRDQLAVEG 278


>03_04_0121 - 17429529-17430639,17430721-17430866
          Length = 418

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +2

Query: 308 LYRPLRHYFPMV-PVSPYHLVLQGTHVDQARLIPLGH 415
           ++R LR+   M+ P SPYH ++ G   ++A  I  GH
Sbjct: 216 VHRLLRNGMEMLAPASPYHGLIYGAFQERATFISHGH 252


>10_01_0044 - 583349-584044
          Length = 231

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 17/38 (44%), Positives = 25/38 (65%), Gaps = 4/38 (10%)
 Frame = -2

Query: 356 TGRPGPSGS-NG-AKGDKGD--RGVEGVGLPGTEGPRG 255
           + +P   G+ NG A+ ++GD  +GV GV   GT+GPRG
Sbjct: 102 SAQPSNKGATNGSAQENQGDHSQGVHGVQGDGTQGPRG 139


>05_01_0372 - 2913518-2916562,2916674-2917528
          Length = 1299

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
 Frame = -3

Query: 274 EPKVLEELRVQLVYLGSRVGGENEEIL---VEKGL*DLADLQDSGG 146
           +PKV+EE  V+L   G   GG+  E+     + G  ++A+ +D GG
Sbjct: 42  QPKVVEEEEVRLEGKGGGFGGQEVEVAGDGEDGGEVEVAEAKDEGG 87


>04_04_1149 + 31273203-31273695,31274016-31275165,31275617-31277078
          Length = 1034

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 15/36 (41%), Positives = 16/36 (44%)
 Frame = -2

Query: 353 GRPGPSGSNGAKGDKGDRGVEGVGLPGTEGPRGAPG 246
           G  G  G +G  G  G  G  GVG  G  GP G  G
Sbjct: 18  GGRGGGGGDGRGGGYGGAGGGGVGGRGGRGPPGGGG 53


>01_06_1699 - 39269477-39269574,39269690-39269929,39270029-39270092,
            39270251-39270771,39271032-39271326,39271400-39271564,
            39271650-39272237,39272617-39272703,39272982-39274429,
            39274515-39275015,39275574-39275678,39276095-39276143
          Length = 1386

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = +2

Query: 212  PSYPRTQVDQLDPELL*--DLRFRVALLPQHPYLLYRPLR 325
            PS  R  +D +D  LL   DLR R++++PQ P L    +R
Sbjct: 1198 PSEGRILIDDVDISLLGVHDLRSRLSVIPQEPTLFQGTVR 1237


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,397,030
Number of Sequences: 37544
Number of extensions: 419849
Number of successful extensions: 1601
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1600
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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