Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10a10r
         (705 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0512 + 18226981-18227143,18227648-18229555,18229649-182302...    29   3.6  
04_04_0176 - 23329589-23331043                                         29   4.8  
03_02_1011 + 13198641-13198899,13199471-13199604,13199805-131999...    28   8.3  

>09_04_0512 +
           18226981-18227143,18227648-18229555,18229649-18230295,
           18230710-18231949,18232085-18232419,18232500-18232577,
           18232872-18232978,18233020-18233062
          Length = 1506

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -1

Query: 546 SSIRNRFSSSPRAANERSATTANGTTPEEV 457
           SSI N+ SSSP   N+ S    NG +P ++
Sbjct: 847 SSIHNKTSSSPERYNKASLDNENGNSPGQL 876


>04_04_0176 - 23329589-23331043
          Length = 484

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -3

Query: 610 HWDDDSRYGGNSSRHYNQKELEFHQK 533
           +WD+  RYGG+  R+    E +F ++
Sbjct: 437 NWDESDRYGGDRRRYQEYPERDFERR 462


>03_02_1011 +
           13198641-13198899,13199471-13199604,13199805-13199934,
           13200290-13200450,13200587-13200688,13200786-13200890,
           13200965-13201093,13201180-13201320,13201855-13201955,
           13202300-13202357,13202656-13202943
          Length = 535

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/27 (48%), Positives = 20/27 (74%)
 Frame = -3

Query: 604 DDDSRYGGNSSRHYNQKELEFHQKQIQ 524
           + D R+ GN+ R  NQKELEF ++++Q
Sbjct: 80  EPDRRWFGNT-RVVNQKELEFFREELQ 105


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,203,325
Number of Sequences: 37544
Number of extensions: 256906
Number of successful extensions: 541
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 540
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)