Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10a07f
         (609 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0347 + 23341582-23341658,23341786-23341852,23343426-23343512     31   0.94 
12_01_0999 - 10128057-10128143,10128346-10128516,10128602-101286...    29   2.9  
01_06_0509 - 29921224-29924589                                         29   2.9  
02_02_0372 + 9522751-9522964,9523043-9523255,9523471-9523555,952...    28   5.0  
08_01_0621 - 5426210-5427787                                           28   6.7  
07_03_0853 - 22024907-22024944,22025327-22025600                       27   8.8  

>03_05_0347 + 23341582-23341658,23341786-23341852,23343426-23343512
          Length = 76

 Score = 30.7 bits (66), Expect = 0.94
 Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = +3

Query: 390 SPSKNAKMEEDKQNQVILQNNVEGNDEVQV-DTIEADKSDM 509
           +P+K A  EE ++     +NNV   +E+Q+ D +EAD  D+
Sbjct: 35  TPNKWAPSEEGREKDDASKNNVVSVEELQICDELEADNEDL 75


>12_01_0999 -
           10128057-10128143,10128346-10128516,10128602-10128677,
           10128787-10128917,10129007-10129111,10129215-10129391,
           10129475-10129623,10129715-10129826,10131819-10132070,
           10132323-10132444,10132537-10133371,10133386-10133489,
           10133582-10133647,10133766-10133888,10133975-10134151,
           10134217-10134387,10134478-10134957,10135357-10135369
          Length = 1116

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
 Frame = +3

Query: 399 KNAKMEEDKQNQVILQNNVEGN----DEVQVDTIEADKSDMTSSRRSSTAPDIVRGVDFQ 566
           +N K  E +Q + +   N++G+      VQ    E ++       R     DIVRG + Q
Sbjct: 100 RNRKQREYRQKKKVGSTNLDGSVTSLTPVQPANEERNRKQREYRARKKAKSDIVRGSNSQ 159

Query: 567 YTEH 578
            T+H
Sbjct: 160 STDH 163


>01_06_0509 - 29921224-29924589
          Length = 1121

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +3

Query: 108 YMKNITLTYLCKNK*NMSQFTGFSEDDLERIKS 206
           Y++N  L+  C+ K ++ +FT    DDL R+ S
Sbjct: 527 YLRNDELSSECRGKGSLLEFTSIRPDDLSRMPS 559


>02_02_0372 +
           9522751-9522964,9523043-9523255,9523471-9523555,
           9524373-9524448,9524974-9525150,9525473-9525566,
           9526357-9526466,9526568-9526657,9526752-9526832,
           9528468-9529277,9530777-9530896
          Length = 689

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -3

Query: 214 VSPDLILSKSSSLKPVNCDMFYLFLHRYVR 125
           V P L  SK    K +  D+ YL LHRYV+
Sbjct: 242 VRPMLEFSKDDMYKLLLIDLSYLVLHRYVK 271


>08_01_0621 - 5426210-5427787
          Length = 525

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +3

Query: 384 PTSPSKNAKMEEDKQNQVILQNNVEGNDEVQVDTIEADKSDMTSS 518
           PTS S N   E D      +  + E +    +   E+++SD++SS
Sbjct: 473 PTSASVNDSEESDLSTSASVNESDESDQSSSISVNESEESDLSSS 517


>07_03_0853 - 22024907-22024944,22025327-22025600
          Length = 103

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = +3

Query: 381 TPTSPSKNAKMEEDKQNQVILQNNVEGNDEVQVDTIEAD 497
           +PT P +    + D++ Q +   + +G D V+VD+   D
Sbjct: 24  SPTHPPRQPSEQIDEEVQEVTIPDADGTDPVEVDSASVD 62


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,834,277
Number of Sequences: 37544
Number of extensions: 251939
Number of successful extensions: 583
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 583
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)