SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10a02f
         (544 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1446 + 26584117-26584329,26585799-26585981                       53   2e-07
01_06_0930 + 33134385-33138257                                         35   0.048
08_02_1449 - 27174451-27178005                                         30   1.0  
04_03_0995 + 21521877-21521977,21522152-21522217,21523630-215236...    30   1.0  
12_02_0615 + 21242819-21243201,21244510-21244630,21244728-212448...    28   4.2  
12_02_0514 - 19912066-19913346                                         28   4.2  
02_01_0401 + 2927581-2927669,2927795-2927921,2928354-2928437,292...    28   4.2  
07_03_1204 + 24855052-24855210,24855411-24855974,24856157-248562...    28   5.5  
03_02_0013 - 4921925-4922077,4922176-4922252,4922360-4922445,492...    28   5.5  
12_01_0407 - 3219980-3221278                                           27   7.3  
12_01_0356 - 2707820-2708395,2708475-2708705,2709071-2709190,270...    27   9.7  
11_01_0332 + 2483743-2484131,2486062-2486182,2486307-2486426,248...    27   9.7  
01_03_0145 - 13116302-13116958,13117365-13117430,13117786-131180...    27   9.7  

>07_03_1446 + 26584117-26584329,26585799-26585981
          Length = 131

 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 31/91 (34%), Positives = 51/91 (56%), Gaps = 2/91 (2%)
 Frame = +1

Query: 121 PVLSSSHAEARNRVLSLYKAWYRQIPYIVKDYDIPK--SEAQCREKLKELFIKNKHVTDI 294
           P  S+S  EAR+RV   ++   R IP I++ Y++    + +Q R  + +   KN+ VT+ 
Sbjct: 11  PPNSASLEEARHRVFDFFRQACRAIPSIMEIYNLDDVVTPSQLRSTIAKEIRKNQGVTNP 70

Query: 295 RVIDMLVIKGQMELKESVNIWKQKGHIMAYF 387
           +VIDML+ KG  EL       KQ+ H++  +
Sbjct: 71  KVIDMLLFKGMEELGNITEHAKQRHHVIGQY 101


>01_06_0930 + 33134385-33138257
          Length = 1290

 Score = 34.7 bits (76), Expect = 0.048
 Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
 Frame = +1

Query: 151 RNRVLSLYKAWYRQIPYIVKDYDIPKSEAQCREK-----LKELFIKNKHVTDIRVIDMLV 315
           RNR+  LY+A   QIPYI K   +   +  C +K     L++L   NK   ++RV+++  
Sbjct: 673 RNRMYKLYRAALPQIPYIGKLSLLQDIDGFCVQKQKGYELRQLRDMNKLGGNLRVVNLEN 732

Query: 316 IKGQMELKES 345
           + G+ E  ES
Sbjct: 733 VTGKDEASES 742


>08_02_1449 - 27174451-27178005
          Length = 1184

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
 Frame = +1

Query: 154 NRVLSLYKAWYRQIPYIVKDYD-----IPKSEAQCREKLKELFIKNKHVTDIRVIDMLVI 318
           N +LS+ K  YR +P  +K         PK     R+KL +L+I N  + +  ++D L  
Sbjct: 402 NEILSILKLSYRHLPLEMKQCFAFCAIFPKDYQMERDKLVQLWIANNFIQEEGMMD-LEE 460

Query: 319 KGQMELKESV 348
           +GQ    E V
Sbjct: 461 RGQFVFNELV 470


>04_03_0995 +
           21521877-21521977,21522152-21522217,21523630-21523696,
           21523959-21524041,21524318-21524359,21524614-21524733,
           21524806-21524869,21525028-21525113,21525217-21525299,
           21525994-21526070,21526549-21526567,21526568-21526661,
           21527042-21527087
          Length = 315

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 4/70 (5%)
 Frame = +1

Query: 124 VLSSSHAEARNRVLSLYKAWYRQIPY----IVKDYDIPKSEAQCREKLKELFIKNKHVTD 291
           VLS+ H + R      Y  W+R  P+    ++ DY++     QC   L      N    D
Sbjct: 64  VLSTLHLQLRVEYTLYYNIWFRSYPFSICGMLWDYELKHKIFQCNYSLYAFISLNLKYND 123

Query: 292 IRVIDMLVIK 321
           I    + V+K
Sbjct: 124 IAKHALDVVK 133


>12_02_0615 +
           21242819-21243201,21244510-21244630,21244728-21244847,
           21245015-21245245,21245365-21245862
          Length = 450

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 166 SLYKAWYRQIPYIVKDYDIPKSEAQCREK 252
           SL KAW+R++P  V D   P+   QC  +
Sbjct: 205 SLIKAWFRELPEGVLDSLSPEQVLQCNSE 233


>12_02_0514 - 19912066-19913346
          Length = 426

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -2

Query: 126 YWFYGFCTNFYCLPC-RHFRSESICDSIQHKNLLMKIN 16
           YW  GFC  ++ + C RH ++   C S+    LL+  +
Sbjct: 374 YWRNGFCCKYFAICCMRHCKNPLTCLSLLAAFLLLSFS 411


>02_01_0401 +
           2927581-2927669,2927795-2927921,2928354-2928437,
           2928546-2928662,2928754-2928945,2929031-2929234,
           2929322-2929809,2930429-2930528,2930686-2930745,
           2931007-2931126,2931407-2931751
          Length = 641

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
 Frame = -1

Query: 250 SLDIVLLTWECHNPSLYR---GSDDTMLCKDSELYSELQHETTI 128
           SL     TWE H  SL     G  ++M     +LYSEL++E  +
Sbjct: 193 SLSTCTCTWEEHISSLRDLKFGGSESMRSTQQDLYSELEYEQDV 236


>07_03_1204 +
           24855052-24855210,24855411-24855974,24856157-24856225,
           24856304-24856426,24856733-24856864,24857143-24857266,
           24857547-24857614,24857849-24857991,24858615-24858722,
           24858826-24858901,24859442-24859578,24859660-24859819,
           24859901-24860080,24860159-24860275,24860540-24860695,
           24861209-24861379,24861479-24861591,24861669-24861792,
           24861961-24862056,24862139-24862201,24862299-24862364
          Length = 982

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = +1

Query: 184 YRQIPYIVKDYDIPKSEAQCREKLKELFIKNKHVTDIRVI 303
           ++ + Y+V++ D+    A CR+   + + K +  TDI V+
Sbjct: 729 HQGVNYLVEELDLSSRTAFCRKADLKYYTKTRDYTDINVL 768


>03_02_0013 -
           4921925-4922077,4922176-4922252,4922360-4922445,
           4922527-4922720,4922829-4923115,4923219-4923345,
           4923586-4923816,4923982-4924047,4925300-4925474,
           4925563-4925770,4925886-4925934,4926249-4926578
          Length = 660

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 12/37 (32%), Positives = 25/37 (67%), Gaps = 3/37 (8%)
 Frame = +1

Query: 259 ELFIKNKHVTDIRVIDMLVIK---GQMELKESVNIWK 360
           EL +K+ + T I V+  +++    G +++KE+++IWK
Sbjct: 427 ELLMKSLYYTPIAVLASIILSALPGLIDIKEALSIWK 463


>12_01_0407 - 3219980-3221278
          Length = 432

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 15/55 (27%), Positives = 26/55 (47%)
 Frame = +1

Query: 130 SSSHAEARNRVLSLYKAWYRQIPYIVKDYDIPKSEAQCREKLKELFIKNKHVTDI 294
           + S A  RN  +   K  ++ I  ++ +     S  QC +K  +L  + K +TDI
Sbjct: 130 ADSGAGKRNSAIMQKKGKWKAISKVMGERGCSVSPQQCEDKFNDLNKRYKRLTDI 184


>12_01_0356 -
           2707820-2708395,2708475-2708705,2709071-2709190,
           2709281-2709401,2711588-2712027
          Length = 495

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 169 LYKAWYRQIPYIVKDYDIPKSEAQCREK 252
           L KAW+R++P  V D   P+   QC+ +
Sbjct: 225 LIKAWFRELPSGVLDSIPPEQVMQCQSE 252


>11_01_0332 +
           2483743-2484131,2486062-2486182,2486307-2486426,
           2486897-2487127,2487205-2487783
          Length = 479

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 169 LYKAWYRQIPYIVKDYDIPKSEAQCREK 252
           L KAW+R++P  V D   P+   QC+ +
Sbjct: 208 LIKAWFRELPSGVLDSIPPEQVMQCQSE 235


>01_03_0145 -
           13116302-13116958,13117365-13117430,13117786-13118065,
           13118283-13119028
          Length = 582

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -2

Query: 480 FKICTK*INKSFVSRKEFRKEIFWFRFFCW 391
           F++C+K +    +S K F  + F  RFF W
Sbjct: 92  FQVCSKQVGFHILSFKNFISKDFHARFFLW 121


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,510,841
Number of Sequences: 37544
Number of extensions: 238718
Number of successful extensions: 576
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 576
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -