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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10a01r
         (737 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0287 - 2137425-2137581,2137981-2138117,2138246-2138515,213...    36   0.034
12_01_0278 - 2016172-2016262,2017057-2017140,2017701-2017837,201...    33   0.24 
05_05_0030 - 21698625-21698752,21699589-21699627,21699708-216998...    33   0.24 
03_02_0058 - 5316112-5316418,5316497-5316705,5316773-5316859,531...    32   0.41 
08_02_0423 - 16946435-16946542,16946924-16947045,16947442-169475...    29   5.1  
12_01_0199 - 1467137-1467172,1467302-1467391,1468304-1468396,146...    28   6.7  
11_08_0006 - 27548581-27549177                                         28   6.7  
09_04_0461 + 17781413-17781474,17781576-17781629,17781729-177818...    28   6.7  
03_05_0432 - 24231984-24233048,24233391-24235160,24235261-242365...    28   6.7  

>11_01_0287 -
           2137425-2137581,2137981-2138117,2138246-2138515,
           2138591-2138716,2138790-2138932,2139032-2139117,
           2139574-2139752,2139941-2140210,2140282-2140380
          Length = 488

 Score = 35.9 bits (79), Expect = 0.034
 Identities = 28/97 (28%), Positives = 44/97 (45%)
 Frame = +3

Query: 69  LNNLPDLVVVSFEKFWKFVIQSVIQPLGYVLAEENNFESGLNIANSKNGTELPNADAR*Q 248
           + NLPDL  V F    KFV  S++  LG  ++ +     GL I  S +G+  P   +   
Sbjct: 61  VENLPDLRPVPFNNVQKFVPHSMVVALGRDISGKLMATGGLLIGGS-SGSYNPKLMSSTC 119

Query: 249 SYADCGDQTKVFDNKASTTGYSQFPAKDGGLTVDGDR 359
            +++  +   +FD      G +     +G L V GDR
Sbjct: 120 KFSEVYEGGPLFDFDGDFLGMNLSLTTEGTLFVPGDR 156


>12_01_0278 -
           2016172-2016262,2017057-2017140,2017701-2017837,
           2017961-2018230,2018306-2018430,2018515-2018646,
           2018744-2018821,2019177-2019220,2019803-2019981,
           2020168-2020428,2020528-2020655,2020749-2020853,
           2020932-2021073
          Length = 591

 Score = 33.1 bits (72), Expect = 0.24
 Identities = 27/97 (27%), Positives = 43/97 (44%)
 Frame = +3

Query: 69  LNNLPDLVVVSFEKFWKFVIQSVIQPLGYVLAEENNFESGLNIANSKNGTELPNADAR*Q 248
           + NLPDL  V F    KFV  S +  LG  ++ +    SG+ I  S NG  + +      
Sbjct: 153 VENLPDLRPVPFNNVQKFVPHSKVVALGRDISGKLMTTSGVLIGESYNGYLMSST----C 208

Query: 249 SYADCGDQTKVFDNKASTTGYSQFPAKDGGLTVDGDR 359
            +++  +   +FD      G +     +G + V GDR
Sbjct: 209 KFSEVYEGGPLFDFDGDFLGMNLSFTTEGTVFVPGDR 245


>05_05_0030 - 21698625-21698752,21699589-21699627,21699708-21699822,
            21699927-21699992,21701064-21701203,21701424-21701473,
            21701608-21702045,21702757-21702839,21702941-21702977,
            21703366-21703457,21703531-21703615,21703950-21704029,
            21704049-21704105,21704350-21704747,21706322-21707223,
            21707331-21707421,21708123-21710273,21710375-21710813,
            21711180-21711299
          Length = 1836

 Score = 33.1 bits (72), Expect = 0.24
 Identities = 12/41 (29%), Positives = 26/41 (63%)
 Frame = -1

Query: 587  IDRITSGIQERGLDPIYIEKAEGDYTFPISDIFSASGTVAH 465
            + RI+  I+ERG++ +  E+ +G Y+  + ++ ++S   AH
Sbjct: 1346 VQRISHAIRERGMNNVLAERIQGKYSVALGNLMASSIVFAH 1386


>03_02_0058 -
           5316112-5316418,5316497-5316705,5316773-5316859,
           5316945-5317055,5317536-5317643,5319082-5319149,
           5319269-5319320
          Length = 313

 Score = 32.3 bits (70), Expect = 0.41
 Identities = 20/84 (23%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
 Frame = -1

Query: 599 IVNVIDRITSGIQ-ERGLDPIYIEKAEGDYTFPISDIFSASGTVAHLALEGASNVVVNDV 423
           ++  +  I+  I  +RGL    ++K  G YT  +S ++    T+  + ++  SN+     
Sbjct: 61  VIKAVKNISMQIGGDRGLTSTAVKKG-GLYTLDVSSVYKYKSTLVDVKVDTESNISTTLT 119

Query: 422 TFNILRS-KFSVDLTLPKLSASSV 354
            F++L S K    + LP  ++  V
Sbjct: 120 VFDVLPSTKLVTSVKLPDYNSGKV 143


>08_02_0423 -
           16946435-16946542,16946924-16947045,16947442-16947504,
           16949707-16949844,16950062-16950170,16950610-16950934,
           16952482-16952645
          Length = 342

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
 Frame = +3

Query: 261 CGDQTKVFDNKASTTGYSQFPAKDGGLTVDG---DRRGAELGEG 383
           C    +  D  A +    Q PA+DGG TVD    +R+G  +G+G
Sbjct: 172 CSSHVEKGDKVAVSVAIEQ-PAEDGGWTVDAHHEERKGLYIGQG 214


>12_01_0199 -
           1467137-1467172,1467302-1467391,1468304-1468396,
           1468488-1469515,1470005-1470552,1470656-1470695,
           1473774-1475196
          Length = 1085

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 21/77 (27%), Positives = 32/77 (41%)
 Frame = -1

Query: 488 SASGTVAHLALEGASNVVVNDVTFNILRSKFSVDLTLPKLSASSVAVNGEATIFGRELAV 309
           SAS T A   L  + N+ + D + N+L   F  D     L  +     GEA +   ++  
Sbjct: 130 SASATAARARLHDSGNLAIEDGSGNVLWQSF--DHPTDTLLPTQRIAAGEAMVSADKILA 187

Query: 308 ASSGSLVVEDLRLVSTV 258
           A   S    D  ++S V
Sbjct: 188 AGFYSFRFSDYAMLSLV 204


>11_08_0006 - 27548581-27549177
          Length = 198

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
 Frame = +3

Query: 306 GYSQFPAKDGGLTVDGDRRGAELGEGKIDAEF*SQNVESDVIDDN--VAGAFESQVG 470
           G  QFP  DGG ++DG   G         +   + N   D   DN   +G  ES VG
Sbjct: 92  GQQQFPGNDGGRSIDGIDEGRVCNRQTQASRSVADNRGDDSRTDNNDDSGGGESNVG 148


>09_04_0461 +
           17781413-17781474,17781576-17781629,17781729-17781839,
           17781921-17781991,17782256-17782449,17783019-17783096
          Length = 189

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 14/29 (48%), Positives = 20/29 (68%)
 Frame = -1

Query: 197 NVESALKVVLFGEDVSERLNDALNNKLPE 111
           NVE+AL+VV    +V+E+L   + N LPE
Sbjct: 105 NVETALEVVEHAAEVTEKLAANVANALPE 133


>03_05_0432 -
           24231984-24233048,24233391-24235160,24235261-24236582,
           24236668-24237013
          Length = 1500

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 18/46 (39%), Positives = 26/46 (56%)
 Frame = +3

Query: 558 LLDTGSDAIDDVHNQLLDQILSFSLKVNF*GHSSDAGSESNKYKCE 695
           LL+T SDA D   N+L+++ L  +L  +F    +D  SE N  K E
Sbjct: 736 LLNTISDAQDVKQNELVEKSLVVTLLEHFGQEVADLRSERNTLKQE 781


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,282,321
Number of Sequences: 37544
Number of extensions: 337174
Number of successful extensions: 1143
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1143
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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