Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_C13
         (347 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0118 - 18162934-18162982,18163246-18163357,18163583-18163622     27   3.1  
09_04_0269 + 16265191-16265472,16265574-16266149                       27   4.0  
05_01_0046 + 320600-320631,320694-320733,320871-320957,321282-32...    27   4.0  
12_01_0357 + 2720860-2721066,2721169-2721384,2721481-2723608,272...    27   5.3  
01_07_0358 + 43039613-43039677,43039742-43039807,43039918-43040029     26   9.3  

>05_04_0118 - 18162934-18162982,18163246-18163357,18163583-18163622
          Length = 66

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 6/35 (17%)
 Frame = +3

Query: 222 SGRKHSRCCTSILRKFSGR------QHCVTVDCCC 308
           +G+K  RCC S  R+ + R      + C+   CCC
Sbjct: 24  AGKKKGRCCGSSCRRSTKRGETSFIEGCIAALCCC 58


>09_04_0269 + 16265191-16265472,16265574-16266149
          Length = 285

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -2

Query: 184 MESTXPQCHILQHRRPRLPL 125
           M  T P C +L++ RPRLPL
Sbjct: 157 MARTGPLCLLLENPRPRLPL 176


>05_01_0046 +
           320600-320631,320694-320733,320871-320957,321282-321378,
           321532-321823,321850-321990,322285-322390
          Length = 264

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 16/55 (29%), Positives = 22/55 (40%)
 Frame = +3

Query: 78  ARRXQKLKEHGASSCISGKRGRRCCNIWHWGXVDSISGSRARFQLXGNSGRKHSR 242
           A++ +   E   S    G  G +    W+W   D  SGS + FQ    S    SR
Sbjct: 87  AQKWKNFDEDDCSDTPYGNFGGKRSFTWYWPGEDDESGSPSGFQWRDESQSNKSR 141


>12_01_0357 +
           2720860-2721066,2721169-2721384,2721481-2723608,
           2723699-2724124,2724242-2724546,2724660-2724823,
           2724899-2724980
          Length = 1175

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3

Query: 189 GSRARFQLXGNSGRKHSRCCTS 254
           GSRA F+   NS +KHS+ C +
Sbjct: 865 GSRALFEGGFNSSQKHSKSCAA 886


>01_07_0358 + 43039613-43039677,43039742-43039807,43039918-43040029
          Length = 80

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -3

Query: 255 CLCSSGCASCRYS 217
           C C +GC  C+YS
Sbjct: 14  CQCGNGCGGCKYS 26


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,394,754
Number of Sequences: 37544
Number of extensions: 135241
Number of successful extensions: 286
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 285
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 286
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 506210712
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)