Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_B01
         (885 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0825 - 27986393-27986767,27987541-27987625,27987936-279880...    28   8.7  
01_05_0679 + 24230740-24230929,24231330-24231461,24231710-242319...    28   8.7  

>03_05_0825 -
           27986393-27986767,27987541-27987625,27987936-27988036,
           27988144-27988227,27988868-27988939,27989203-27989319,
           27989386-27989526,27989951-27990122,27990324-27990372,
           27990773-27990821,27991240-27991270,27991301-27991371
          Length = 448

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = +3

Query: 171 PKEDNSLNTLAESAKKTIEELREKVE 248
           PKE ++  T+A + +KT EE+R +++
Sbjct: 91  PKESSTATTMAAATEKTAEEIRRELQ 116


>01_05_0679 +
           24230740-24230929,24231330-24231461,24231710-24231977,
           24232170-24232388,24233538-24233673,24233899-24234147,
           24234783-24235100
          Length = 503

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
 Frame = +3

Query: 204 ESAKKTIEELR--EKVESALAPETVKKNFGTMVDSFNEFYKNLKPAE 338
           E A+K  E L+  +K   +L PE +K+ F +++ +F +F   L+P E
Sbjct: 259 EEARKFNEALQRWDKNAVSLVPEGLKRFFLSIMSNFRDFEDELEPHE 305


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,020,921
Number of Sequences: 37544
Number of extensions: 199185
Number of successful extensions: 458
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 458
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)