Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_A15
         (860 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0670 - 30764007-30764135,30764404-30764548,30765200-307653...    31   1.6  

>02_05_0670 -
           30764007-30764135,30764404-30764548,30765200-30765309,
           30765578-30765761,30765857-30765969,30766242-30766412,
           30766493-30766756,30767537-30767782
          Length = 453

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
 Frame = +3

Query: 345 RILFASVTHRLNVCAAHTSVMTIVEERLSKF-VNSSCVLSVPESYMTLLAIHSCDLL 512
           RIL  S+    N  A H  +  + E  +    +N SC   +PE  M       CDLL
Sbjct: 143 RILIGSIMEEYNKAAWHELIERVEESGVDALEINFSCPHGMPERKMGAAVGQDCDLL 199


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,057,962
Number of Sequences: 37544
Number of extensions: 329211
Number of successful extensions: 658
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 657
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)