Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_A11
         (895 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0137 + 5832608-5833590,5833680-5833731,5833827-5833904,583...    31   1.6  
04_03_0661 - 18468244-18469580,18469610-18469619                       30   2.2  
03_05_0867 - 28381891-28383018                                         30   2.9  
09_03_0051 + 11902322-11903125                                         29   3.8  
01_06_1607 + 38605100-38605364,38605415-38605722,38606213-38606977     29   5.0  
04_01_0277 + 3681869-3681922,3681946-3682004,3683011-3683631,368...    29   6.6  
03_02_0163 - 6056959-6058989                                           28   8.7  

>03_02_0137 +
           5832608-5833590,5833680-5833731,5833827-5833904,
           5835228-5835347,5835618-5835716,5835821-5835975,
           5836117-5836257,5836395-5836503
          Length = 578

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +1

Query: 220 NVLGQNVPLIPNNGPSEAPATEASIQSTEKSVQTPPPEP 336
           N+LG   P  P   P+ A  + ++  S  K + TP P P
Sbjct: 87  NILGSPPPSKPAKSPTTASKSASASASARKKISTPAPPP 125


>04_03_0661 - 18468244-18469580,18469610-18469619
          Length = 448

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
 Frame = +1

Query: 163 FDSFSINSFPNFPLYRPL---TNVLGQNVPLIPNNGPSEAPATEASIQSTEKSVQTPPPE 333
           FDSF     P   +  PL   T  +G        N  S+APA  AS +++++    P P 
Sbjct: 317 FDSFLEKRKPAPSIASPLSVRTETVGLPTEKAAGNASSKAPAQHASSKTSDEKAAAPAPA 376

Query: 334 P 336
           P
Sbjct: 377 P 377


>03_05_0867 - 28381891-28383018
          Length = 375

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +1

Query: 241 PLIPN-NGPSEAPATEASIQSTEKSVQTPPPEPSDLNVLNYSSKD 372
           PL+P+ + PS  PA  A+ +      ++PPP PS  +  + +S D
Sbjct: 28  PLLPHADDPSAPPAAAAAARKLPVKRRSPPPRPSSPSSSDPASSD 72


>09_03_0051 + 11902322-11903125
          Length = 267

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 19/57 (33%), Positives = 23/57 (40%)
 Frame = +1

Query: 169 SFSINSFPNFPLYRPLTNVLGQNVPLIPNNGPSEAPATEASIQSTEKSVQTPPPEPS 339
           SFSI SFP+   Y    +      P      P  AP       ++E    TPPP PS
Sbjct: 68  SFSIFSFPSASFYAFHPDAAEPRTPTPRKRSPVAAPPA-----ASEPQTPTPPPRPS 119


>01_06_1607 + 38605100-38605364,38605415-38605722,38606213-38606977
          Length = 445

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +1

Query: 253 NNGPSEAPATEASIQSTEKSVQTPPPEPSDLNVLN 357
           + G   AP  +    S+  S  TPPP PS L++L+
Sbjct: 221 SRGGGAAPVQDNKQGSSSTSTPTPPPTPSKLHLLS 255


>04_01_0277 +
           3681869-3681922,3681946-3682004,3683011-3683631,
           3683718-3684147
          Length = 387

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -2

Query: 417 SSLRQRWWWYVRYRGILR 364
           S++R+RWWWY R + + R
Sbjct: 34  SAVRRRWWWYERAQELER 51


>03_02_0163 - 6056959-6058989
          Length = 676

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 17/33 (51%), Positives = 18/33 (54%)
 Frame = +1

Query: 250 PNNGPSEAPATEASIQSTEKSVQTPPPEPSDLN 348
           P N PS +PAT         SVQ PPP PSD N
Sbjct: 21  PKN-PSPSPAT------ARVSVQDPPPPPSDAN 46


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,786,369
Number of Sequences: 37544
Number of extensions: 335367
Number of successful extensions: 1105
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1022
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1098
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)