SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_A06
         (916 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0253 - 16196275-16196307,16196425-16196550,16196643-161967...    31   1.7  
02_05_0319 - 27872601-27874457                                         30   2.2  
04_03_0582 + 17528335-17529790,17529913-17531651,17531814-175320...    29   3.9  
01_06_0093 + 26385471-26385740,26385842-26385934,26386526-263865...    29   5.2  
05_03_0459 - 14284513-14286336                                         29   6.8  
02_02_0280 - 8515894-8517309                                           29   6.8  
08_01_1011 + 10226160-10226676,10226794-10226810,10227677-102278...    28   9.0  
06_03_0118 + 16836401-16837456,16837558-16837701,16837812-16838231     28   9.0  
03_03_0111 + 14527548-14528543,14529158-14529337,14529428-14529805     28   9.0  

>10_08_0253 - 16196275-16196307,16196425-16196550,16196643-16196741,
            16196822-16197001,16197090-16197371,16197471-16199141,
            16199257-16199463,16199566-16199700,16199792-16200082,
            16200403-16200621,16200876-16201034,16201120-16201181,
            16201257-16201383,16201460-16201693,16201777-16202003,
            16202163-16202257,16202341-16202468,16202574-16202594,
            16202765-16202921,16203007-16203075,16203228-16203341,
            16203415-16203491,16203576-16203688,16204432-16204507,
            16204592-16204756,16204825-16204952,16205049-16205130,
            16205426-16205548,16205633-16205860,16205933-16206034,
            16206144-16206341,16206581-16206760,16206868-16207020,
            16207690-16207797,16208201-16208355,16208786-16208912,
            16209825-16209914,16209986-16210127,16210303-16210379,
            16210467-16210582,16210638-16210773,16211130-16211198,
            16211279-16211361,16211655-16211720,16211788-16211974,
            16212054-16213547,16213635-16214165,16214234-16214363,
            16214407-16215878,16216359-16216364,16216750-16217055,
            16217364-16217468,16217577-16217772,16217862-16217929,
            16218853-16220631,16221026-16221151,16221604-16221780,
            16221997-16222128,16223461-16223498,16223710-16223788,
            16224175-16224284,16224787-16224935,16225027-16225197,
            16225281-16225552,16226355-16226442,16227942-16228369
          Length = 5157

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 21/76 (27%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
 Frame = +2

Query: 455  SMSQDQGKIQHQVDEEALSNEDVEPAPVYDFRAIEETAPRDKCLYSS-FFEPP--LHQSA 625
            S+ + +GK++HQ +E A S+ + +    YD + ++E   ++K + +   F PP   H+S 
Sbjct: 3028 SLLELEGKVRHQCEELAGSSSEEDG---YDQKLLQELKTKEKSIRAKVVFRPPQSRHKSL 3084

Query: 626  EEYCANRDMQRLRRCE 673
               C   + +RL  C+
Sbjct: 3085 IVACCEFE-ERLSECK 3099


>02_05_0319 - 27872601-27874457
          Length = 618

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 22/79 (27%), Positives = 35/79 (44%)
 Frame = +2

Query: 164 SSIAAQEKPREELPTRALRPRSTLTRKTTNALSSQSVGSGGSAKRKTALNKNQIPKTNVH 343
           +S+ A   P   LPT A+   + L R  TN+ SS +  S  S+   +A +  Q+      
Sbjct: 204 NSVTAASSPSLPLPT-AVNSTALLARSPTNSSSSTASSSASSSPPISAASSRQLLSEAAA 262

Query: 344 SGGDGCLLLERTTLSGIPL 400
           +  DG      + LS + L
Sbjct: 263 AVADGNHTAAASLLSALKL 281


>04_03_0582 +
           17528335-17529790,17529913-17531651,17531814-17532035,
           17532062-17533525
          Length = 1626

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 28/119 (23%), Positives = 49/119 (41%), Gaps = 6/119 (5%)
 Frame = +2

Query: 368 LERTTLSGIPLIQDDNDQGWRPDAYSSEHSMSQDQGK---IQHQVDEEALSNEDVEPAPV 538
           L+     G+P   D+   GWR      + +++ D+ +    + QV        D  P  +
Sbjct: 629 LQDLGFKGVPHTYDNRRDGWRNVKVRLDRAVADDKWRDLFPEAQVSHLVSPCSDHSPI-L 687

Query: 539 YDFRAIEETAPRDKCLYSSFF---EPPLHQSAEEYCANRDMQRLRRCEVDLFLGNIRFA 706
            +F   + T PR KCL+       EP   Q  EE   N  + +    ++++ LG +  A
Sbjct: 688 LEFIVKDTTRPRQKCLHYEIVWEREPESVQVIEEAWINAGV-KTDLGDINIALGRVMSA 745


>01_06_0093 +
           26385471-26385740,26385842-26385934,26386526-26386591,
           26386872-26387012,26387465-26387692,26387808-26387925,
           26387993-26388132,26388259-26388426,26388520-26388675,
           26388773-26389138
          Length = 581

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = +2

Query: 545 FRAIEETAPRDKCLYSSFFEPPLHQSAEEYCA 640
           F  +++ AP ++ L S+FF  P+H SA E CA
Sbjct: 526 FVTVDKNAPVNQDLISNFFSDPVH-SAIEVCA 556


>05_03_0459 - 14284513-14286336
          Length = 607

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 23/94 (24%), Positives = 43/94 (45%)
 Frame = +2

Query: 221 PRSTLTRKTTNALSSQSVGSGGSAKRKTALNKNQIPKTNVHSGGDGCLLLERTTLSGIPL 400
           PRS+ +R  +++ SS S GSG S+   +  +          SG   C     ++ SG   
Sbjct: 266 PRSSSSRSDSSSSSSSSNGSGSSSSSSSGAS----------SGSSSC-AGSSSSSSGSDT 314

Query: 401 IQDDNDQGWRPDAYSSEHSMSQDQGKIQHQVDEE 502
             D +    RPD  +   + ++ +  ++H+V E+
Sbjct: 315 DADADSASNRPDTTTDHPTEAEVKPMVEHEVMEQ 348


>02_02_0280 - 8515894-8517309
          Length = 471

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = +2

Query: 227 STLTRKTTNALSSQSVGSGGSAKRKTALNKNQIPKTNVHSGGDG 358
           + + +KT++ ++    G+G +  R     KN    T + SGG G
Sbjct: 379 AAMAQKTSDTIAQAGHGAGEAKNRAAESGKNSSATTTIGSGGGG 422


>08_01_1011 +
           10226160-10226676,10226794-10226810,10227677-10227886,
           10227921-10228406
          Length = 409

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 15/49 (30%), Positives = 28/49 (57%)
 Frame = +2

Query: 374 RTTLSGIPLIQDDNDQGWRPDAYSSEHSMSQDQGKIQHQVDEEALSNED 520
           +T+L  I   + D D+    D  +SE  + +D    + ++DE++LS+ED
Sbjct: 243 KTSLGQIAYSEWDEDE-IDEDPLNSEDEIDEDPLNSEDEIDEDSLSSED 290


>06_03_0118 + 16836401-16837456,16837558-16837701,16837812-16838231
          Length = 539

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 4/87 (4%)
 Frame = +3

Query: 468 TKEKFNTKLMKRPFPMRMLNQH-PYTILEQLKKQHRVISVCIPVSLNPLYIRVLKSIVLT 644
           T  K N KL++   P+  L +H    I+ + + Q   +     ++     +  +  +VLT
Sbjct: 409 TTGKLNPKLLQETSPIECLQKHIKKVIMREFRMQRSELDFLKFIAGRGQVLEKVV-VVLT 467

Query: 645 ETCSGLED---AKSTSFSATLGLLNVD 716
            TCS   D   A  ++F A+  L N D
Sbjct: 468 HTCSSSADRLRASLSTFMASTRLANED 494


>03_03_0111 + 14527548-14528543,14529158-14529337,14529428-14529805
          Length = 517

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = -2

Query: 702 NLMLPRKRSTSHLLSRCMSLLAQYSSAL*CKGGSKKLEYRHLS 574
           N MLP     S+  + CM +L      + C GG+ +LE   LS
Sbjct: 114 NYMLPLNLHNSNSSNGCMQVLGSNKLMITCGGGATRLESMVLS 156


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,808,446
Number of Sequences: 37544
Number of extensions: 421515
Number of successful extensions: 1265
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1262
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2600672280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -