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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_A04
         (652 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0409 + 3143838-3144017,3144345-3144461,3144659-3144739,314...    61   9e-10
07_01_0412 + 3151059-3151090,3151374-3151833,3151899-3151979,315...    46   3e-05
11_01_0131 + 1086916-1088127,1088213-1089469                           28   7.4  
04_04_1619 - 34825922-34825998,34826109-34826200,34827281-348273...    28   7.4  
04_04_1617 - 34815889-34816080,34816185-34816412,34816591-348168...    28   7.4  
05_03_0558 + 15454552-15454746,15456700-15457134                       27   9.8  
02_05_1153 - 34501778-34502961,34503052-34503219,34503306-34504263     27   9.8  

>07_01_0409 +
           3143838-3144017,3144345-3144461,3144659-3144739,
           3145335-3145405,3145479-3145589,3146194-3146382,
           3146643-3146670
          Length = 258

 Score = 60.9 bits (141), Expect = 9e-10
 Identities = 35/92 (38%), Positives = 51/92 (55%), Gaps = 13/92 (14%)
 Frame = +2

Query: 413 VTGGSLEDSKKAIELSRTDSKLFTTVGCHPTRCSEFL-----------SNPDDYLQGLRD 559
           VTGGSL++S++A+E++ TD +L     C    C +++            +P  + Q L  
Sbjct: 61  VTGGSLKESREALEIAETDGEL----SCFDAACFDYVLLGAFKEFEESGDPKGHFQALLA 116

Query: 560 LISGN--KDKVVAIGECGLXYERFHFCEKEVQ 649
           L      K KVVA+GECGL Y+R HFC  +VQ
Sbjct: 117 LAKEGIAKGKVVAVGECGLDYDRLHFCPSDVQ 148


>07_01_0412 +
           3151059-3151090,3151374-3151833,3151899-3151979,
           3152682-3152752,3152827-3152937,3153149-3153231,
           3153489-3153705,3154169-3154252,3154423-3154498
          Length = 404

 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 21/43 (48%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
 Frame = +2

Query: 527 NPDDYLQGLRDLISGN--KDKVVAIGECGLXYERFHFCEKEVQ 649
           +P+ + Q L  L      K KVVA+GECGL Y+R HFC  +VQ
Sbjct: 171 DPEGHFQALLALAKEGIAKGKVVAVGECGLDYDRLHFCPSDVQ 213



 Score = 39.1 bits (87), Expect = 0.003
 Identities = 14/31 (45%), Positives = 23/31 (74%)
 Frame = +2

Query: 323 KGVYNGSRKHEPDLDVVLERAWTSGINKIIV 415
           +G+Y+G + H  D+  VL RAW +G+++IIV
Sbjct: 11  EGIYHGKQCHAADIPAVLARAWAAGVDRIIV 41



 Score = 32.3 bits (70), Expect = 0.34
 Identities = 17/39 (43%), Positives = 28/39 (71%)
 Frame = +2

Query: 362 LDVVLERAWTSGINKIIVTGGSLEDSKKAIELSRTDSKL 478
           L+++L   W SG     VTGGSL++S++A+E++ TD +L
Sbjct: 69  LNLLLSLVW-SGRK---VTGGSLKESREALEIAETDGEL 103


>11_01_0131 + 1086916-1088127,1088213-1089469
          Length = 822

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = -2

Query: 453 SIAFLLSSRLPPVTMILLMPLVQALSSTTSKSGSCFLDPLYTPLYISS 310
           S  F +   LPP  +  L   V ALS+   + G  FL+ L  P+++ S
Sbjct: 126 SFGFAVGCALPPFLVGALTGYV-ALSTDDKRKGDTFLNKLSFPIFLGS 172


>04_04_1619 -
           34825922-34825998,34826109-34826200,34827281-34827399,
           34827507-34827734,34827904-34828164,34828258-34828614,
           34828803-34828916,34828990-34829063,34829176-34829359,
           34829685-34829830,34829951-34830309,34835569-34835789
          Length = 743

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 23/77 (29%), Positives = 40/77 (51%)
 Frame = +2

Query: 320 YKGVYNGSRKHEPDLDVVLERAWTSGINKIIVTGGSLEDSKKAIELSRTDSKLFTTVGCH 499
           YKG   GSR  +PDL  +  R W +  N++  +G  ++D+K    ++  D+K    + C 
Sbjct: 81  YKGNICGSRHGDPDLHELDVRYWMNP-NQVYQSG--VKDNK----INLADAKAICLMEC- 132

Query: 500 PTRCSEFLSNPDDYLQG 550
           P   ++ L+   DY +G
Sbjct: 133 PIPAADGLNFVCDYPEG 149


>04_04_1617 -
           34815889-34816080,34816185-34816412,34816591-34816851,
           34816943-34817299,34817466-34817579,34817653-34817726,
           34817839-34818022,34818349-34818494,34818628-34818986,
           34819912-34820132
          Length = 711

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 23/77 (29%), Positives = 40/77 (51%)
 Frame = +2

Query: 320 YKGVYNGSRKHEPDLDVVLERAWTSGINKIIVTGGSLEDSKKAIELSRTDSKLFTTVGCH 499
           YKG   GSR  +PDL  +  R W +  N++  +G  ++D+K    ++  D+K    + C 
Sbjct: 81  YKGNICGSRHGDPDLHELDVRYWMNP-NQVYQSG--VKDNK----INLADAKAICLMEC- 132

Query: 500 PTRCSEFLSNPDDYLQG 550
           P   ++ L+   DY +G
Sbjct: 133 PMPAADGLNFVCDYPEG 149


>05_03_0558 + 15454552-15454746,15456700-15457134
          Length = 209

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +2

Query: 323 KGVYNGSRKHEPDLDVVLERAWTSGINKIIVTGGSLEDSKKAIE 454
           +G+  G+R H P   V  +  W S  +K++   G  E++  A+E
Sbjct: 63  RGMPAGARTHCPKGGVADDPTWISDGDKVVCGHGRAEEASVAVE 106


>02_05_1153 - 34501778-34502961,34503052-34503219,34503306-34504263
          Length = 769

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/49 (26%), Positives = 26/49 (53%)
 Frame = +2

Query: 275 LRKYIDIGANLTDDMYKGVYNGSRKHEPDLDVVLERAWTSGINKIIVTG 421
           +R ++D G+N  DD +K +    R   PD    +   +++  N+++V G
Sbjct: 92  VRVFVDAGSNCHDDRFKAISGHYR--TPDYGRSIAYRFSTARNRLVVLG 138


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,672,967
Number of Sequences: 37544
Number of extensions: 266693
Number of successful extensions: 626
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 625
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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