Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0031
         (728 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0933 + 21661209-21662813                                         31   0.94 
05_04_0310 + 20114415-20117819                                         31   1.2  
05_03_0416 + 13684604-13688050                                         30   1.6  
11_01_0014 + 108647-108816,109704-109803,109891-110018,110232-11...    29   2.9  
12_01_0014 + 105422-105520,105598-105725,105939-106101,106198-10...    28   6.6  
08_02_1532 + 27675824-27676531                                         28   6.6  
02_02_0418 + 10000744-10000840,10000952-10001023,10001786-100018...    28   8.7  

>10_08_0933 + 21661209-21662813
          Length = 534

 Score = 31.1 bits (67), Expect = 0.94
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +2

Query: 362 GKPVTNQESSGRCWLFAALNVMR-LPFMKKYGIEE 463
           G   T  + SGRC L  ALN+   LPF++K  ++E
Sbjct: 76  GGAATTDDRSGRCGLLNALNLSTFLPFVRKPAVDE 110


>05_04_0310 + 20114415-20117819
          Length = 1134

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -1

Query: 596 SLSKKFTTLPSSFSPFLAVSTMLFNQKCDLQSYPK 492
           SL K  T LP S +    + T+   ++C L+ +PK
Sbjct: 629 SLCKTITKLPKSVTKLFLLETLYIPKRCQLEEFPK 663


>05_03_0416 + 13684604-13688050
          Length = 1148

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = -1

Query: 581 FTTLPSSFSPFLAVSTMLFNQKCDLQSYPKRTGNFVRIQILQFH 450
           F  LP S      + T+  N   DL+S P+  G+   +Q LQ H
Sbjct: 508 FVMLPESVGKLKKLRTLELNYVIDLESLPQSIGDCQGLQSLQLH 551


>11_01_0014 +
           108647-108816,109704-109803,109891-110018,110232-110394,
           110491-110603,111080-111118,111319-111402,111486-111534,
           111624-111715,111999-112128,112225-112301,112377-113995,
           114348-114545,114635-115173
          Length = 1166

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 364 PFSLNLKVENMK*SICLPSVDGYFEW 287
           PFS NLK+ +   S C PS D + +W
Sbjct: 640 PFSQNLKLADSNDSTCQPSSDKHHDW 665


>12_01_0014 +
           105422-105520,105598-105725,105939-106101,106198-106310,
           106787-106825,107026-107109,107193-107241,107331-107422,
           107680-107809,107906-107982,108058-109676,110024-110221,
           110287-110825
          Length = 1109

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -2

Query: 364 PFSLNLKVENMK*SICLPSVDGYFEW 287
           PFS NLK+     S C PS D + +W
Sbjct: 583 PFSQNLKLAECNDSTCQPSSDKHRDW 608


>08_02_1532 + 27675824-27676531
          Length = 235

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -2

Query: 502 LIPKEQVTL*EFKFFNSIFLHERQTHHVECCKQPASTGALLI 377
           ++PK  +    F+  NS+  +E Q   +ECC      GA+L+
Sbjct: 177 VLPKLSLISKAFQKKNSVICNEEQLQALECCIGDLEAGAVLL 218


>02_02_0418 +
           10000744-10000840,10000952-10001023,10001786-10001848,
           10001952-10002008,10002159-10002226,10002327-10002408,
           10002517-10002572,10002934-10003236,10003638-10003724,
           10004454-10004628,10004813-10004934,10005171-10005334,
           10006201-10006455,10006979-10007100,10007220-10007341,
           10007452-10007600,10007649-10007652
          Length = 665

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = -2

Query: 319 CLPSVDGYFEWIISSTNILSQLFFGSA*KSLRIFDSSSNVRGTELDI 179
           C  ++ G     +S  +IL  +FF    ++ R+ D +  +R ++LDI
Sbjct: 607 CAKTMPGGKPVTLSDQDILEMIFFPVVNEACRVMDENVVIRASDLDI 653


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,533,573
Number of Sequences: 37544
Number of extensions: 358763
Number of successful extensions: 893
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 869
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 893
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)