SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0025
         (779 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0554 - 4121692-4121895,4121991-4122148,4123241-4123354,412...    50   2e-06
03_06_0293 - 32889813-32890019,32890144-32890301,32891310-328914...    50   2e-06
03_06_0292 - 32886148-32886354,32886997-32887154,32887265-328873...    47   1e-05
03_05_1105 + 30438140-30438350,30438448-30438926                       46   3e-05
05_04_0254 - 19444409-19444621,19444724-19444887,19444974-194450...    44   1e-04
07_01_0553 - 4119782-4119988,4120160-4120320,4120861-4121155           38   0.007
11_06_0192 + 21128298-21128829,21129341-21129407,21131169-211312...    37   0.016
04_01_0097 - 998766-999383,999479-999861,1000021-1000398,1000486...    30   2.4  
11_08_0094 - 28314681-28314747,28315264-28315353,28315589-283157...    29   4.1  
11_04_0293 + 15926561-15928834                                         29   5.5  
04_04_0689 - 27292271-27292709,27293717-27293856,27294572-272946...    28   9.6  
03_05_0426 - 24140298-24140434,24141303-24141359,24141466-241415...    28   9.6  

>07_01_0554 -
           4121692-4121895,4121991-4122148,4123241-4123354,
           4123824-4124082
          Length = 244

 Score = 50.4 bits (115), Expect = 2e-06
 Identities = 27/76 (35%), Positives = 39/76 (51%)
 Frame = +2

Query: 272 HTNNWMMIIAFILSMGTLIALIVKRRDSPANLYLLAAFTVIQAYTIGVVVSYYNTMVVLQ 451
           H    + I   IL    L  L    +  P NL LL  FTV  ++ +G+  ++ +  V+L+
Sbjct: 71  HAGLGLYIFLIILPFIVLCPLYYYHQKHPVNLILLGLFTVAISFAVGMTCAFTSGKVILE 130

Query: 452 ALALTFAVVFSLTLYT 499
           +  LT  VVFSLT YT
Sbjct: 131 SAILTTVVVFSLTAYT 146



 Score = 38.3 bits (85), Expect = 0.007
 Identities = 18/43 (41%), Positives = 27/43 (62%)
 Frame = +3

Query: 144 MNAEREIRLAFIRKVYGLLTVQLLATVSIAAVFMFVEPYRHLY 272
           M    E+R A IRK+Y +L++QLL T ++AAV + V    H +
Sbjct: 25  MTEPPEMRWALIRKIYVILSMQLLLTAAVAAVVVKVRAISHFF 67


>03_06_0293 -
           32889813-32890019,32890144-32890301,32891310-32891423,
           32891531-32891777
          Length = 241

 Score = 50.4 bits (115), Expect = 2e-06
 Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 2/91 (2%)
 Frame = +2

Query: 266 FIHTNNWMMIIAFILSMGTLIALIVK--RRDSPANLYLLAAFTVIQAYTIGVVVSYYNTM 439
           F+ +N    +  F+L +  ++   ++   +  P NL LL  FTV  ++ +G+  +Y +  
Sbjct: 63  FVSSNAGFALYIFLLFLPLIVLCPLRYYHQKHPVNLLLLGLFTVAISFAVGMTCAYTSGK 122

Query: 440 VVLQALALTFAVVFSLTLYTLNSNGTSHSLD 532
           V+ +A ALT  VV SLT YT  +    H  +
Sbjct: 123 VIFEAAALTAVVVISLTAYTFWAAKRGHDFN 153



 Score = 29.1 bits (62), Expect = 4.1
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = +3

Query: 159 EIRLAFIRKVYGLLTVQLLATVSIAA 236
           ++R A I K+Y +L+VQL  T ++AA
Sbjct: 26  DLRWALIHKIYVILSVQLAMTAAVAA 51


>03_06_0292 -
           32886148-32886354,32886997-32887154,32887265-32887378,
           32887660-32887924
          Length = 247

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 25/93 (26%), Positives = 49/93 (52%), Gaps = 4/93 (4%)
 Frame = +2

Query: 233 GCIYVC*AVQTFIHTNNWMMIIAFILSMGT----LIALIVKRRDSPANLYLLAAFTVIQA 400
           G + +   ++TF       +++A+++ + +    ++ +I  R   P NL+ L  FTV  +
Sbjct: 56  GAVNLVEPIKTFFQARTPEVLVAYVIIIISPLIMMLPMIYFRNKHPINLFFLLLFTVCIS 115

Query: 401 YTIGVVVSYYNTMVVLQALALTFAVVFSLTLYT 499
           +++G+     N  V+ QA  +T A+V  LT YT
Sbjct: 116 FSVGLGCLSKNGTVIFQAAGMTAAIVIGLTCYT 148



 Score = 41.1 bits (92), Expect = 0.001
 Identities = 18/38 (47%), Positives = 27/38 (71%)
 Frame = +3

Query: 159 EIRLAFIRKVYGLLTVQLLATVSIAAVFMFVEPYRHLY 272
           ++R AFIRKVY +++VQLL TV++A     VEP +  +
Sbjct: 31  QLRWAFIRKVYVIVSVQLLVTVAVAGAVNLVEPIKTFF 68


>03_05_1105 + 30438140-30438350,30438448-30438926
          Length = 229

 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 26/71 (36%), Positives = 37/71 (52%)
 Frame = +2

Query: 287 MMIIAFILSMGTLIALIVKRRDSPANLYLLAAFTVIQAYTIGVVVSYYNTMVVLQALALT 466
           + I   IL    L  L    +  P NL LLA FT   ++ +G+  ++    V+L++  LT
Sbjct: 60  LYIFLIILPFIVLCPLYYYYQRHPVNLLLLALFTAAISFAVGLTCAFTKGEVILESAILT 119

Query: 467 FAVVFSLTLYT 499
            AVV SLT YT
Sbjct: 120 AAVVVSLTAYT 130



 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 16/33 (48%), Positives = 28/33 (84%)
 Frame = +3

Query: 159 EIRLAFIRKVYGLLTVQLLATVSIAAVFMFVEP 257
           ++R AF+RKVY +L++Q+L T+++A+V +FV P
Sbjct: 14  QLRWAFVRKVYAILSIQMLLTIAVASVVVFVRP 46


>05_04_0254 -
           19444409-19444621,19444724-19444887,19444974-19445087,
           19446086-19446395
          Length = 266

 Score = 44.4 bits (100), Expect = 1e-04
 Identities = 24/71 (33%), Positives = 38/71 (53%)
 Frame = +2

Query: 287 MMIIAFILSMGTLIALIVKRRDSPANLYLLAAFTVIQAYTIGVVVSYYNTMVVLQALALT 466
           + ++  +L    ++ L   +   P N   L  FT+  +++IGV  +     +VL+AL LT
Sbjct: 93  LALVLAVLPFVLMVPLYHYQHKHPHNFVYLGLFTLCLSFSIGVACANTQGKIVLEALILT 152

Query: 467 FAVVFSLTLYT 499
            AVV SLT YT
Sbjct: 153 SAVVASLTAYT 163



 Score = 35.9 bits (79), Expect = 0.036
 Identities = 14/33 (42%), Positives = 22/33 (66%)
 Frame = +3

Query: 141 VMNAEREIRLAFIRKVYGLLTVQLLATVSIAAV 239
           +   E  +R  F+RKVYG+L  QLL T +++A+
Sbjct: 44  ISRGESALRWGFVRKVYGILAAQLLLTTAVSAL 76


>07_01_0553 - 4119782-4119988,4120160-4120320,4120861-4121155
          Length = 220

 Score = 38.3 bits (85), Expect = 0.007
 Identities = 18/38 (47%), Positives = 24/38 (63%)
 Frame = +3

Query: 159 EIRLAFIRKVYGLLTVQLLATVSIAAVFMFVEPYRHLY 272
           E+R AFIRKVY ++  QL+ TV+IAA    V   R  +
Sbjct: 41  ELRWAFIRKVYAIVATQLVVTVAIAAAVYSVPAIRRFF 78



 Score = 34.3 bits (75), Expect = 0.11
 Identities = 20/69 (28%), Positives = 34/69 (49%)
 Frame = +2

Query: 293 IIAFILSMGTLIALIVKRRDSPANLYLLAAFTVIQAYTIGVVVSYYNTMVVLQALALTFA 472
           I+A  L +   IA  V    +    +L      + A+ + +V      + +++A +LTF 
Sbjct: 53  IVATQLVVTVAIAAAVYSVPAIRRFFLARTPASLAAFVLVIVAPLIAGIAIIEAASLTFG 112

Query: 473 VVFSLTLYT 499
           +VF LTLYT
Sbjct: 113 LVFGLTLYT 121


>11_06_0192 +
           21128298-21128829,21129341-21129407,21131169-21131211,
           21131301-21131367,21131613-21131770,21131863-21132057
          Length = 353

 Score = 37.1 bits (82), Expect = 0.016
 Identities = 23/56 (41%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
 Frame = +3

Query: 96  GGKESVEDDFAYRNNVMNAEREIRL--AFIRKVYGLLTVQLLATVSIAAVFMFVEP 257
           G KE V +    R  V   E + RL  AF+RKVY +L +Q   T +IA V   V P
Sbjct: 55  GEKEVVAEKAPARRKVAAEEEDPRLRWAFVRKVYCILALQFAVTAAIAVVAWAVRP 110


>04_01_0097 -
           998766-999383,999479-999861,1000021-1000398,
           1000486-1000711,1000799-1001323,1003032-1003164,
           1004353-1004435,1004645-1005349,1005483-1005556,
           1006290-1006392,1006485-1006727
          Length = 1156

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = -1

Query: 248 KHKYSRNGDRSQELHCQETVDFPYKGKTDLPFSIHYIVAVCKVIL 114
           K   SRN  R Q+L   ++ +   K K  LP S  YIV +C+ +L
Sbjct: 343 KQVQSRNNSRRQKLEGDKS-EVGEKRKRALPSSSQYIVVMCRSVL 386


>11_08_0094 -
           28314681-28314747,28315264-28315353,28315589-28315725,
           28317020-28317589
          Length = 287

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +3

Query: 60  IPLMYAQEDCELGGKESVED-DFAYRNNVMNAEREIRLAFIRKV 188
           +PL Y  +DC++ G + ++D D A   N  + E + RL  + +V
Sbjct: 191 LPLFYFGDDCDMWGGDMLKDTDIALAPNFPSDEGQKRLEHLHRV 234


>11_04_0293 + 15926561-15928834
          Length = 757

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = -3

Query: 654 EEHAEEYRADDGQSHFEGGALHHQLKKTPQNENCQTSYEHVSNE 523
           +E  EEY +DDG+   +GG L   L  + Q+ + +T  E  S +
Sbjct: 360 DEEEEEYLSDDGKDDDDGGGLQAPL-LSRQSTDVETKNEPASGQ 402


>04_04_0689 -
           27292271-27292709,27293717-27293856,27294572-27294664,
           27295614-27296012,27296258-27296392,27296482-27296835
          Length = 519

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +3

Query: 639 LQHVPRXRHAPDDEGPVPRRSTSWATINLYFGHSETISCTY 761
           L H+ +  HA ++ G V RR T+W  +N + G +E  S  Y
Sbjct: 214 LSHIEK--HADNNYGSVIRRKTNWVQLNPH-GEAEKQSAGY 251


>03_05_0426 -
           24140298-24140434,24141303-24141359,24141466-24141503,
           24141638-24141732
          Length = 108

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -1

Query: 536 MYPMNEKSRWN*ACTV*EKIRRRMLKPELATP 441
           +YP N+ SRW    T  ++ R+R L P L  P
Sbjct: 24  LYPFNQASRW--MTTFLQQFRKRALLPPLHAP 53


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,765,453
Number of Sequences: 37544
Number of extensions: 459643
Number of successful extensions: 1118
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1086
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1118
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -