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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0024
         (476 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0703 + 6212409-6212456,6212661-6212742,6214031-6214106,621...    50   1e-06
09_04_0652 - 19227686-19227926,19229368-19232294                       33   0.16 
03_02_0505 + 8981856-8982879,8983014-8983129,8985407-8985994,898...    29   1.5  
11_06_0257 + 21746643-21748091                                         29   1.9  
05_04_0194 + 18949268-18951514,18952063-18952215,18952304-18954241     29   2.6  
06_03_0473 + 21190878-21191188,21191269-21192355,21192972-211931...    28   3.4  
03_01_0112 + 902459-902770,903275-903280                               28   4.5  
07_03_1041 + 23468867-23469215,23469231-23469348,23470920-234710...    27   5.9  

>08_01_0703 +
           6212409-6212456,6212661-6212742,6214031-6214106,
           6214498-6214594,6214760-6214862,6214973-6215103,
           6215285-6215462,6215528-6215715,6215945-6216154,
           6216231-6216578,6216660-6216786,6217304-6217455
          Length = 579

 Score = 49.6 bits (113), Expect = 1e-06
 Identities = 23/36 (63%), Positives = 25/36 (69%)
 Frame = +1

Query: 133 LRNAGLTVQDVSDITRAPEMLGGRVKTLHPAVHAGI 240
           L  AG+ V  V  IT  PEML GRVKTLHP+VH GI
Sbjct: 82  LEAAGVNVTKVEQITNFPEMLDGRVKTLHPSVHGGI 117



 Score = 39.1 bits (87), Expect = 0.002
 Identities = 41/157 (26%), Positives = 62/157 (39%), Gaps = 6/157 (3%)
 Frame = +3

Query: 24  KLALLSVSDKTGLLSLAKSLSECGLQLIASXGTATXASERWPHSSRC--VGHHESTGDAR 197
           K AL+S+SDKT L  L   L   G  +I++ GTA+       + ++   + +     D R
Sbjct: 46  KQALISLSDKTDLAYLGNGLQALGFSIISTGGTASSLEAAGVNVTKVEQITNFPEMLDGR 105

Query: 198 RSGENFTSSGTCWDLSSIXDSDQEDMKRQKYE----MISVVVXXLYPFXXXXXXXXXXXX 365
               + +  G       +   DQE   +   E       VVV  LYPF            
Sbjct: 106 VKTLHPSVHG-----GILARRDQEHHLKALNEHGIGTFDVVVVNLYPFYNKVTSGVISFE 160

Query: 366 XXXXNIDIGXVTLLRAQPRTTXGSPFVCXPADYDAVV 476
               NIDIG  T++RA  +       +    DY A++
Sbjct: 161 DGIENIDIGGPTMIRAAAKNHKDVLVMVDHEDYPALL 197


>09_04_0652 - 19227686-19227926,19229368-19232294
          Length = 1055

 Score = 32.7 bits (71), Expect = 0.16
 Identities = 18/64 (28%), Positives = 30/64 (46%)
 Frame = +3

Query: 75  KSLSECGLQLIASXGTATXASERWPHSSRCVGHHESTGDARRSGENFTSSGTCWDLSSIX 254
           ++++E    LI    +    SE+ P  S C     S  +  ++G +    GTCW L  I 
Sbjct: 427 QTVAEGNNSLIPGSESGQVVSEKEPEPSECSESCASVPNLEQTGTSNVEDGTCW-LDYID 485

Query: 255 DSDQ 266
           D+D+
Sbjct: 486 DADE 489


>03_02_0505 +
           8981856-8982879,8983014-8983129,8985407-8985994,
           8986091-8986192
          Length = 609

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
 Frame = +2

Query: 56  GSTLVSKEPVGMWPAVDCQXRYR----HGRFGTLASQFKMCR 169
           G   + ++PVG WPA  C   YR      RFG  AS  +M R
Sbjct: 129 GHVWLDEQPVGPWPAATCPP-YRVSADASRFGDRASASRMAR 169


>11_06_0257 + 21746643-21748091
          Length = 482

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -3

Query: 192 HLRCSRDVRHILNCEASVPKRPWRYRXWQST 100
           HL C++  R+++N  +      WR+R W S+
Sbjct: 300 HLPCAQPCRYLVNTPSGELLHVWRFRQWVSS 330


>05_04_0194 + 18949268-18951514,18952063-18952215,18952304-18954241
          Length = 1445

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = +3

Query: 162 CVGHHESTGDARRSGENFTSSGTCWDLSSIXDSDQEDMKRQKYEMI 299
           C   +E TG      ++F  +GT WDL     +D    +R+ +E +
Sbjct: 822 CPDLYEQTGTGDGQSQDFHINGTVWDLIPGVITDMYQHQREAFEFM 867


>06_03_0473 +
           21190878-21191188,21191269-21192355,21192972-21193194,
           21193286-21193356,21193385-21193441,21193442-21194056,
           21194168-21194237,21194470-21194745,21194916-21195130,
           21195224-21195529,21195750-21195813,21195902-21196141,
           21196306-21196415
          Length = 1214

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 23/62 (37%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
 Frame = +3

Query: 21  GKLALLSVSDKTGLLSL--AKSLSECGLQLIASXGTATXASERWPHSSRCVGHHESTGDA 194
           G L+ LS S    LL L  +K+L    + LIAS   A  ASER+  +    GH +  G  
Sbjct: 36  GVLSRLSFSWLNPLLRLGRSKALDLADVPLIASEDGAARASERFAEAWSLHGHGKDGGGG 95

Query: 195 RR 200
            R
Sbjct: 96  GR 97


>03_01_0112 + 902459-902770,903275-903280
          Length = 105

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -3

Query: 201 TSEHLRCSRDVRHILNCEASVPKRPWRYR 115
           T+  LR  RD RH+  CE+ VPK   R++
Sbjct: 58  TATRLRL-RDGRHLAYCESGVPKEEARFK 85


>07_03_1041 + 23468867-23469215,23469231-23469348,23470920-23471041,
            23471074-23471532,23474675-23474949,23475179-23475315,
            23475353-23475405,23475456-23475516,23475606-23475707,
            23476380-23476488,23476568-23476693,23476986-23477037,
            23477236-23477317,23477395-23477488,23478166-23478262,
            23478605-23478698,23479458-23479530,23480198-23480371,
            23480526-23480648,23481396-23481533,23482270-23482446
          Length = 1004

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 13/46 (28%), Positives = 19/46 (41%)
 Frame = +3

Query: 102  LIASXGTATXASERWPHSSRCVGHHESTGDARRSGENFTSSGTCWD 239
            L A+   A+   + W  +       +S  D RRSG     +G C D
Sbjct: 957  LTATGAMASFGMQSWEITVHVSSRFQSPADLRRSGARMACNGGCTD 1002


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,363,455
Number of Sequences: 37544
Number of extensions: 197481
Number of successful extensions: 551
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 551
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 979080328
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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