Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0013
         (847 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0155 + 22787658-22787930,22788029-22788096,22789600-227899...    58   7e-09
01_06_1235 - 35602548-35602594,35603057-35603060,35603186-356032...    48   7e-06
08_01_0511 + 4459685-4459755,4461553-4463653,4463741-4463808,446...    29   6.2  

>05_05_0155 +
           22787658-22787930,22788029-22788096,22789600-22789915,
           22790207-22790323
          Length = 257

 Score = 58.4 bits (135), Expect = 7e-09
 Identities = 33/116 (28%), Positives = 54/116 (46%)
 Frame = +3

Query: 354 GTSVGHTMNIYYCYSCGYKKVFEDYAGIIQQKYPEISVIGANYDPPGFNMYLHELLVLGK 533
           G   G T+ + +C SC YK        +++  +P I VI  NY PP     L +L+ + +
Sbjct: 96  GAGYGTTVELQFCASCSYKGTAMTMKRMLETSFPGIHVILHNYPPPFPKRVLGKLVPILQ 155

Query: 534 MLVIMCILSGVNIFAWLNKPQPAWWSWCLENKLYACMMMFFLANMIEGQLISSGSF 701
           +  I  I++G +IF  L    P W+     N+      ++   N  +  L SSG+F
Sbjct: 156 VGAIATIMAGDHIFPRLGMVPPPWYYSLRANRFGTMATIWLFGNFAQSFLQSSGAF 211


>01_06_1235 -
           35602548-35602594,35603057-35603060,35603186-35603290,
           35604274-35604589,35605898-35605968,35606076-35606270
          Length = 245

 Score = 48.4 bits (110), Expect = 7e-06
 Identities = 27/116 (23%), Positives = 51/116 (43%)
 Frame = +3

Query: 354 GTSVGHTMNIYYCYSCGYKKVFEDYAGIIQQKYPEISVIGANYDPPGFNMYLHELLVLGK 533
           G + G T+ + +C SC Y+        +++  +P I V+  NY PP     L + +   +
Sbjct: 71  GPASGTTVELKFCASCSYRGNAVTVKKMLETSFPGIHVVLENYPPPFPKRALSKAVPFLQ 130

Query: 534 MLVIMCILSGVNIFAWLNKPQPAWWSWCLENKLYACMMMFFLANMIEGQLISSGSF 701
           +  +  +++G  IF       P W+     N+      ++   N  +  L SSG+F
Sbjct: 131 VGAMATLMAGDQIFPRFGMVPPPWYYSLRANRFGTMATIWLFGNFAQSFLQSSGAF 186


>08_01_0511 +
           4459685-4459755,4461553-4463653,4463741-4463808,
           4465156-4465282,4465379-4465429
          Length = 805

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
 Frame = -2

Query: 846 YKKGFSGEXXFWKTAGXLTNYLETIPDGCGILPVXILDQSGMLFKRYLKSS-QRILAVLQ 670
           +K+ F  E  ++     ++N    I   CG LP+ ++  S +L  +Y K    R+LA + 
Sbjct: 90  FKRAFGSENLYYPHLEEVSN---GIIKKCGGLPLAVITISSLLADQYAKDEWVRVLAAIG 146

Query: 669 SYLLK 655
           S L K
Sbjct: 147 SALAK 151


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,601,086
Number of Sequences: 37544
Number of extensions: 445514
Number of successful extensions: 992
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 957
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 992
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2350456800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)