Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0008
         (852 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0169 + 14670994-14673714,14673799-14673879,14675460-146756...    31   1.5  
11_08_0008 + 27591454-27592154,27595078-27595253,27595774-275959...    30   2.0  
04_03_0767 + 19389337-19389381,19390586-19390643,19390720-193907...    29   4.7  
04_04_1070 + 30579263-30579861,30579970-30580095,30580190-30580394     28   8.2  
02_02_0055 + 6403183-6403357,6404090-6404673                           28   8.2  

>07_03_0169 +
           14670994-14673714,14673799-14673879,14675460-14675612,
           14675910-14676073,14676162-14676309,14676426-14676548,
           14676754-14676841,14677493-14677674
          Length = 1219

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -3

Query: 622 SASPGAALSADPRGTVRIRRCVRPTRLDVDLFLVTDVETT 503
           + + GA L  DPRG +   R    +R D  +FL TD++ T
Sbjct: 76  NVASGAGLK-DPRGLLGAHRTGAESRFDAAIFLTTDIQQT 114


>11_08_0008 +
           27591454-27592154,27595078-27595253,27595774-27595968,
           27598124-27599184
          Length = 710

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = +3

Query: 591 SAERAAPGDADMACLTLEYTHQCQGHVGRLARNRKLFPXCR--XCPDTAXG 737
           SA R+A G    AC++    ++C+      A+  KL+P  R   C DT  G
Sbjct: 275 SAARSAAGQVAPACVSANNINECELRKADPAKYEKLYPCYRGSRCIDTVGG 325


>04_03_0767 +
           19389337-19389381,19390586-19390643,19390720-19390759,
           19390859-19390926,19391007-19391081,19391161-19391216,
           19391317-19391361,19391450-19391701,19391787-19391881,
           19392395-19392485,19392578-19392688,19392788-19392982,
           19393071-19393262
          Length = 440

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = -1

Query: 501 NDASCPS*SPRKWSCKRPKLSHQTPFFDVIHVKITPLTSPTPRQRQPE 358
           ++ S P  +P K    +PKL  ++P  +   + + P TSPT  Q  P+
Sbjct: 161 SEDSTPKETPPKAEETKPKLEEKSPKAEPPKMPLPPKTSPTEPQLPPK 208


>04_04_1070 + 30579263-30579861,30579970-30580095,30580190-30580394
          Length = 309

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = +1

Query: 688 TESSFLXVVGAQTPPXVQEGRMVGTQGSVPTALEKKSPCSGXFXKVTXQSG 840
           T +SF   V A     V +GR + + G  P +  K+ PC+G   + T   G
Sbjct: 143 TSTSFFSSVTAGEGS-VSKGRSLLSSGKPPLSGHKRKPCAGGHSEATANGG 192


>02_02_0055 + 6403183-6403357,6404090-6404673
          Length = 252

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = -2

Query: 737 TXGGVWAPTTXRKELSVSC*PSDVPLALVRVFQSQTGH 624
           T  G W PT  +K + V     +VP A+ R F    GH
Sbjct: 85  TPSGFWKPTGTKKTIFVVAGGHEVPTAVKRRFVFYLGH 122


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,271,238
Number of Sequences: 37544
Number of extensions: 436027
Number of successful extensions: 1272
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1272
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2373961368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)