Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0003
         (854 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0444 + 17816207-17817436                                         31   0.89 
07_03_0999 - 23216665-23217419,23217626-23217956                       31   0.89 
06_03_0334 - 19660526-19661755                                         31   0.89 
02_05_0702 - 31027908-31027958,31028062-31029311,31029665-310298...    31   1.5  

>11_04_0444 + 17816207-17817436
          Length = 409

 Score = 31.5 bits (68), Expect = 0.89
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = +3

Query: 108 ERSEKRPRHIS*AHQRKK*KGRPGNFNDIPKNSSLL 215
           ER EKRP     A QR+K KG P    D P  + +L
Sbjct: 317 ERKEKRPEGQKAAKQRQKGKGAPSPLGDKPNQNMVL 352


>07_03_0999 - 23216665-23217419,23217626-23217956
          Length = 361

 Score = 31.5 bits (68), Expect = 0.89
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = +3

Query: 108 ERSEKRPRHIS*AHQRKK*KGRPGNFNDIPKNSSLL 215
           ER EKRP     A QR+K KG P    D P  + +L
Sbjct: 248 ERKEKRPEGQKAAKQRQKGKGAPSPLGDKPSQNMVL 283


>06_03_0334 - 19660526-19661755
          Length = 409

 Score = 31.5 bits (68), Expect = 0.89
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = +3

Query: 108 ERSEKRPRHIS*AHQRKK*KGRPGNFNDIPKNSSLL 215
           ER EKRP     A QR+K KG P    D P  + +L
Sbjct: 317 ERKEKRPEGQKAAKQRQKGKGAPSPLGDKPSQNMVL 352


>02_05_0702 -
           31027908-31027958,31028062-31029311,31029665-31029842,
           31029955-31030017,31031597-31031704,31031772-31031836,
           31031928-31032015,31032104-31032157,31032234-31032380,
           31033358-31033429,31034077-31034226,31034317-31034430,
           31034762-31034875,31035925-31036077,31037437-31037529,
           31038202-31038318,31038984-31039086,31039192-31039376,
           31039448-31039522,31040451-31040534,31041547-31041588,
           31041668-31041847,31042109-31042162,31042239-31042280,
           31042869-31042967,31043040-31043174,31043325-31043427,
           31045061-31045134,31045227-31045270,31045393-31045471,
           31045592-31045705,31045842-31045946,31046027-31046161,
           31046447-31046546,31046870-31046883,31046936-31047004,
           31047079-31047182,31047299-31047347,31047931-31048023,
           31048102-31048210,31048619-31048755,31048851-31048928,
           31049015-31049104,31049402-31049467,31049546-31049638,
           31049711-31049839,31050024-31050122,31051366-31051512,
           31051605-31051910
          Length = 2050

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 22/85 (25%), Positives = 42/85 (49%)
 Frame = +1

Query: 1   GLSGXKKNIAHXALFLQDNLVKSDYGLSKENFNYFLNALKNDLDTLAERIKEKSEKAGQE 180
           GL      + +    L  +L K D  L +E+F   L  + +D  +  E++ +KSE+    
Sbjct: 614 GLVQQNVQLRNQVHLLSADLDKRDMEL-RESFQIELKKITDDAASRVEKVMKKSEEQAIM 672

Query: 181 ISTISQKTAPYFKKIDEDFRREWSN 255
           I ++ +  A Y +K+ E+ ++  SN
Sbjct: 673 IESLHRSVAMY-RKLCEEQQKSRSN 696


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,259,440
Number of Sequences: 37544
Number of extensions: 349209
Number of successful extensions: 850
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 850
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2385713652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)