Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0034
         (626 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1357 + 29543922-29545058,29545632-29545784,29545904-29546050     29   3.0  
06_01_0734 + 5419951-5420475                                           29   4.0  
07_03_1461 - 26700613-26700621,26700784-26700851,26701778-267019...    28   7.0  
04_04_1150 + 31278367-31278885,31280065-31281278,31281759-31283355     28   7.0  

>06_03_1357 + 29543922-29545058,29545632-29545784,29545904-29546050
          Length = 478

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 17/41 (41%), Positives = 18/41 (43%)
 Frame = -2

Query: 457 WLANTRRAVRFVGSGLALPLALLKSMGDGNHSPSGGPYARL 335
           W +  R      GS LA  L LL  M      PSG  YARL
Sbjct: 52  WESYDRGIQHHAGSDLASSLRLLADMQAAGLRPSGAAYARL 92


>06_01_0734 + 5419951-5420475
          Length = 174

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 17/39 (43%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
 Frame = -2

Query: 460 LWLANTRRAV---RFVGSGLALPLALLKSMGDGNHSPSG 353
           +W A+   A    R  G GL   LA L  MGDG  SP G
Sbjct: 92  VWAASAAAAAADRRGAGGGLMYLLAQLMGMGDGGGSPYG 130


>07_03_1461 -
           26700613-26700621,26700784-26700851,26701778-26701919,
           26702011-26702318,26702415-26702481,26702543-26702664,
           26702763-26702815,26702924-26703006,26703092-26703160,
           26703235-26703633
          Length = 439

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
 Frame = +3

Query: 318 FIALVGRRAYGPPDGEWLPSP-----MDFSKARGRARPLPTNLTA 437
           FIA +  R   P  G   P P      D S A+GR++P+P++ +A
Sbjct: 326 FIAAMLARPSNPESGPGRPQPRTKQHQDASPAQGRSQPMPSDKSA 370


>04_04_1150 + 31278367-31278885,31280065-31281278,31281759-31283355
          Length = 1109

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +1

Query: 79  VAGIRVLANKWKKDDENSYH*HINQRH 159
           + G  VL  +W+  D    H H +QRH
Sbjct: 111 IGGTPVLVRRWRPRDHRDQHDHQSQRH 137


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,212,706
Number of Sequences: 37544
Number of extensions: 302762
Number of successful extensions: 606
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 606
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)