Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0033
         (679 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1055 - 27234824-27234838,27236087-27236125,27236322-272373...    31   1.1  
02_04_0276 + 21491150-21492761,21492891-21492947,21493817-214938...    30   1.5  
07_03_0846 - 21983581-21986055                                         29   2.6  
01_07_0197 + 41912207-41912652,41913226-41913800,41913828-419157...    29   2.6  
03_05_0951 + 29093962-29094373,29095291-29095388,29095689-290960...    28   7.9  

>06_03_1055 -
           27234824-27234838,27236087-27236125,27236322-27237388,
           27237422-27237630,27237650-27238053
          Length = 577

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/45 (35%), Positives = 27/45 (60%)
 Frame = -2

Query: 231 ASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRSPFGS 97
           A+ A +GK +   E  E   S+QCD T  + +S RE ++R+P+ +
Sbjct: 430 AAAAAAGKPISEHEAIEHLWSRQCDLTEILQNSSRE-KKRNPYAA 473


>02_04_0276 +
           21491150-21492761,21492891-21492947,21493817-21493870,
           21493994-21494022
          Length = 583

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
 Frame = -2

Query: 318 RTFGSCTRPSGRWCEATIRGISLNASKAEAS--LAESGKDMLTVEPRESG--GSKQCDFT 151
           R  GS  RP    C A I+ +S +   AEA   LA  G D++      +G  G+ Q D  
Sbjct: 86  RLVGSARRPDAGTCAALIKKLSASGRTAEARRVLAACGPDVMAYNAMVAGYCGAGQLDAA 145

Query: 150 SRV 142
            R+
Sbjct: 146 RRL 148


>07_03_0846 - 21983581-21986055
          Length = 824

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 19/50 (38%), Positives = 26/50 (52%)
 Frame = +2

Query: 89  DLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASA 238
           DL+D  G  +R    +C+T    S     PD   S VS+ LPD+A+ A A
Sbjct: 326 DLQDFTGGCKRNVPLQCQTN--SSSAQTQPDKFYSMVSVRLPDNAQSAVA 373


>01_07_0197 +
           41912207-41912652,41913226-41913800,41913828-41915748,
           41915836-41916049,41916143-41916394,41916469-41916528,
           41916646-41916776,41916898-41917012,41917084-41917239
          Length = 1289

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 17/32 (53%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -1

Query: 589 YKEFLARG-ARKVTTGITGLWQPSVHSDLLFD 497
           YK F A G  RKV  GIT  + PS+  DL FD
Sbjct: 633 YKIFQAFGLVRKVEKGITRWYYPSMLDDLAFD 664


>03_05_0951 +
           29093962-29094373,29095291-29095388,29095689-29096087,
           29096999-29097724,29097802-29097968,29098046-29098311,
           29098396-29098581,29099072-29099346,29099435-29099683
          Length = 925

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
 Frame = -2

Query: 240 KAEASLAESGKDMLTVEP-RESGGSKQCDFTSRVSHSKRETR-RRSPFGSRRSMLSVFFL 67
           K+ AS A  G D     P R  GG K+    S  + SKR  + R + F     +L    L
Sbjct: 4   KSSASAAHQGGDAPAEAPRRRGGGGKRKSGGSSFTPSKRHAKERNAAFHVPPHLLHSGPL 63

Query: 66  TRASR 52
           TRA+R
Sbjct: 64  TRAAR 68


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,840,069
Number of Sequences: 37544
Number of extensions: 393888
Number of successful extensions: 1025
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1006
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1025
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)